Podarcis raffonei (Aeolian wall lizard): 128419322
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Entry
128419322 CDS
T09310
Symbol
DHX38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform X1
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128419322 (DHX38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
praf03041
]
128419322 (DHX38)
Enzymes [BR:
praf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128419322 (DHX38)
Spliceosome [BR:
praf03041
]
Complex C
Other components
Step II factors
128419322 (DHX38)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
T2SSE
nSTAND3
Flavi_DEAD
PhoH
ResIII
AAA_30
AAA_16
AAA_7
Microtub_bd
SRP54
Motif
Other DBs
NCBI-GeneID:
128419322
NCBI-ProteinID:
XP_053255826
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All DBs
Position
8:complement(48670044..48682497)
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AA seq
1242 aa
AA seq
DB search
MGDTPAEEASLHRLEGLAPETQVGGLLIKKKSAAEEQHVFKIPAPRTSLLGLDLLAAQKR
REREEKDNGAEDRKRSRVSSYKDWAEGKDEGAAGEEEDGDPAGRSSRKDRHYRSARVETP
SHTGGVSEEFWERSRQRERERREHGVYASSKEEKERKRDHGREREYDRKRDRDERDRSRR
SSSSRSEREASSERSSSSRKNEPESPRHRPKDAATPSRSSWEEEDSGYNSSRRSQWESPS
PTPSYRDSERSHRGSASRDSERRDRDRSVRSKYPEDTPLPTPSYKYNDWADHQRHSGATP
WLSRGRGRREDGEDGIAFETEEERQQWEDDQRQADRDWYMMDEGYDEFHNPLASSSEEYV
RKREQHLQKQKQKRISAQRRQINEDNERWETNRMLTSGVVHRLEVDEDFEEDNAAKVHLL
VHNLVPPFLDGRIVFTKQPEPVIPVKDATSDLAIIARKGSQLVRKHREQKERKKAQHKHW
ELAGTKLGNIMGIKKEEEEEGPNQKLAEDGTVDYRTEQKFADHMKEKSEASSEFAKKKSI
VEQRQYLPIFAVQQELLTVIRDNSIVIVVGETGSGKTTQLTQYLHEDSYTDYGLIGCTQP
RRVAAMSVAKRVSEEMSVSLGEEVGYAIRFEDCTSENTVIKYMTDGILLRESLREADLDH
YSAIIMDEAHERSLNTDVLFGLLREVVARRSDLKLIVTSATMDAEKFAAFFGNVPIFHIP
GRTFPVDVLFSKTPQEDYVEAAVKQALQVHLSSAPGDILIFMPGQEDIEVTSEQIVEHLE
ELENAPALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGY
CKLKVFNPRIGMDALQIYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNELLTTTVPE
IQRTNLANVVLLLKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRL
MVEFPLDPALSKMLIVSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQVREKFAVPE
SDHLTYLNVYLQWKNNSYSTLWCNEHFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGTD
WDIVRKCICAAYFHQAAKLKGIGEYVNVRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMT
TKEYMQCVTAVDGEWLAELGPMFYSIKHAGKSRQESRRRAKEEASAMEEEMALAEEQLRA
RREEQERRNPVGSVRSTKIYTPGRKEQGQPATPRHTPARFGL
NT seq
3729 nt
NT seq
+upstream
nt +downstream
nt
atgggggacaccccggcggaagaggcgtcgctgcaccggctggagggcctggcgccggag
acgcaggtcggcggcctcctgatcaagaagaaaagcgccgccgaggagcagcacgtcttc
aagattccggcgccccgcacctccctgctgggtctggacctcctggccgcccagaagcgc
cgcgagcgggaagagaaggacaacggggctgaggaccggaagaggtcccgggtctcctcc
tataaggactgggctgagggcaaggacgagggcgctgccggcgaggaagaggacggcgac
ccagctgggcgcagcagccgcaaggacaggcattatcgctcagcccgtgtggagacacca
tctcacactggaggagtcagtgaggagttttgggagcgcagccggcagcgagaaagggaa
cgccgtgagcatggggtttatgcctcctccaaggaggaaaaagagcgcaagagggaccac
ggccgggagcgggaatatgatcgcaaacgcgaccgagatgagcgggaccgaagtcgacgc
agcagcagcagccgctcagagagagaggcctcctcagagaggagcagcagtagtcggaag
aacgaaccagagagtcctcgccaccgacccaaagatgcagctacgccttcccgctccagc
tgggaggaagaggacagtggctacaacagttcacgccgttcccagtgggagtctccctcc
cccacgccctcctaccgggactcagagagaagtcaccggggatctgcctcccgggatagc
gaacggcgtgatcgtgaccggtctgtcaggagcaagtacccagaggacaccccattgcca
acgccttcatacaaatacaatgattgggctgaccatcaaagacactccggtgcaacacct
tggctctccagaggcagaggaaggcgtgaagatggtgaggatggcattgcttttgaaact
gaggaggagcgacagcagtgggaagatgaccagcggcaagctgacagggactggtacatg
atggatgagggctacgacgagttccacaatcccctggcttcttcatcagaggagtacgtg
aggaagcgggaacagcacctgcagaagcaaaagcagaagcgcatctcagctcagcgtagg
cagataaatgaggataatgagcgctgggagaccaaccgcatgctgacaagcggcgtggtg
caccgactggaggtggacgaggactttgaggaggataacgctgcgaaggttcatctcctg
gttcacaacctggtgcctcccttcctggatgggcgcattgtcttcacgaagcagcctgag
cccgtcatccccgtcaaggatgctacttccgacctggcgatcatcgcccgcaaaggcagc
cagttggtgcgcaagcaccgcgaacagaaggagcgcaaaaaggcccagcacaagcattgg
gagttggcaggcaccaaactggggaacatcatgggcatcaagaaggaggaagaggaagag
ggtcccaaccaaaaattggcagaggatggcactgtggattacaggacagaacagaaattt
gctgatcacatgaaggagaagagtgaagcgagcagtgagtttgccaagaagaagtcaatt
gtggagcagaggcagtatctgcccatctttgctgtgcagcaggagctgctgacagtcatt
agggacaacagcattgtgattgtggtgggggagacaggcagcgggaaaaccacgcaattg
acacagtacctgcacgaggacagctatacggactatggcttgattggctgcacgcagccc
cgccgggtggcagcgatgtcagtggccaagcgtgtcagtgaggagatgagcgtgagcctt
ggtgaggaggtgggctatgccatccgctttgaggattgcacttcagagaacactgtgatc
aagtacatgacggatgggatcctgctgcgtgagtctttgcgcgaagccgaccttgaccat
tatagtgctattattatggatgaagcgcatgaacgctcgctcaacacagacgtgctcttc
ggcctcctgcgtgaggttgtggcccggcgctcagacctgaagctgattgttacttcagcc
accatggatgcagagaagtttgctgctttctttgggaatgtgcccattttccacattcca
ggtcgcacctttcctgtggatgtcctctttagtaagaccccgcaagaagactatgtggaa
gcagccgtgaaacaggccttgcaagtccacctctcaagtgccccaggggatattctgatc
ttcatgccaggccaggaggacattgaggtcacatcggaacagattgtggagcacctggag
gagctggagaatgcacctgccctggctgtcttgcccatctactcccagctgccatctgat
ctgcaggccaagattttccagaaggcaccagatggcgttcggaagtgcattgtggccacc
aacattgcagagacctcactgacggtggatgggatcatgtttgtgattgactctggctac
tgcaagctgaaggttttcaacccacgaattggcatggatgcattgcagatctacccaatc
agccaggccaatgcaaaccagcgctcgggccgagctggaaggacgggcccaggtcagtgt
ttcaggctgtacacccagagtgcatacaagaatgaactgctgacaaccacagtcccagag
attcagcgcaccaacttggccaatgtagtgctgctcctcaagtccttgggtgtgcaggac
ctgctgcagttccacttcatggacccccctcctgaagacaatatgctaaactccatgtac
cagttgtggatccttggggcactagacaacacaggtgggttgacatccacggggcgtctg
atggttgagttcccgcttgatccggctctctccaagatgctgatcgtttcctgtgacatg
ggctgcagctcggagatcctgctgattgtctccatgctctctgttccagccattttctac
cggcccaagggccgggaggaagagagtgaccaggtgcgggagaagtttgctgttcctgag
agtgatcacttgacttacctgaacgtttacctgcaatggaagaacaacagctactctaca
ctttggtgcaacgagcactttatccatgccaaggccatgcgcaaggtgcgagaggtgcga
gcacagctgaaggacattatggtgcagcaacgcatgagcctggcatcctgtggcactgac
tgggatattgttcgcaagtgcatctgtgctgcctactttcaccaggctgccaaactgaag
gggattggcgagtatgtcaatgtccgcactggaatgccctgccacctgcacccaaccagc
tcgctctttggcatgggctacacacctgattacatcgtctaccatgagcttgtaatgacc
actaaggagtacatgcagtgtgtcactgcagtggatggtgaatggctggctgaattggga
cccatgttctacagcatcaaacatgctggcaagtctcgccaggagagccgccgaagggcc
aaagaggaagcttcagccatggaggaggagatggctctggccgaagagcagctgcgtgcc
cgccgagaggagcaagagcgccgcaacccggtgggcagcgtcaggtccaccaagatctac
acgccgggacgcaaggagcaaggccagcctgccaccccacgccacacaccagctcgcttt
ggtctgtaa
DBGET
integrated database retrieval system
