Podarcis raffonei (Aeolian wall lizard): 128420041
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Entry
128420041 CDS
T09310
Symbol
TIA1
Name
(RefSeq) cytotoxic granule associated RNA binding protein TIA1 isoform X1
KO
K13201
nucleolysin TIA-1/TIAR
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
praf03019
]
128420041 (TIA1)
03041 Spliceosome [BR:
praf03041
]
128420041 (TIA1)
Messenger RNA biogenesis [BR:
praf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
128420041 (TIA1)
Spliceosome [BR:
praf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
128420041 (TIA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
RRM_Nup35
RRM_3
Nup35_RRM_2
Calcipressin
XOO_2897-deam
Motif
Other DBs
NCBI-GeneID:
128420041
NCBI-ProteinID:
XP_053257403
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All DBs
Position
8:complement(88449771..88483964)
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AA seq
392 aa
AA seq
DB search
MEDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFYEHRHAA
AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVNTLRSQDHFHVFVGDLSPEITTE
DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN
WATRKPPAPKSTYESNAKQLSYDDVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQI
MEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETPDMINPIQQQNQV
GYPPPYGQWGQWYGNAQQIGQYMPNGWQVPAYGMYGQAWNQGFNQTQSSAAWMGANYGVP
PPPPPPPPPPQGQNGSVLTSQTGYRMAGFETQ
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgaaatgcccaagacgctgtatgtggggaatttgtcaagagatgttaccgaa
gccctaattctccagctcttcagccagattggaccatgcaaaaattgcaaaatgatcatg
gatacagctggaaatgatccatactgttttgtggagttctatgagcatcgacatgcagct
gcagctttagcggctatgaatggacggaagataatgggtaaggaggtcaaagtgaactgg
gcaacaacccccagcagccagaagaaagataccagcagtagtaccgttgtcaacacactg
cgttcacaagaccacttccatgtctttgttggagacctcagcccagaaattacaactgaa
gatattaaagcagcttttgcaccatttggaagaatatcggatgcacgggttgttaaagac
atggcaacaggaaaatctaaaggatatggctttgtttctttcttcaataaatgggatgca
gaaaatgcgattcagcagatggggggacagtggcttggtggaagacaaatcaggacaaac
tgggcaacacgtaaacctccagctccaaagagtacatatgagtcaaacgccaaacaacta
tcctatgatgatgttgtgaatcagtccagtccaagcaactgcacagtgtactgtggaggt
gttacttcagggctaacagaacagctgatgcgccagacattttctccatttgggcaaata
atggaaattcgggtcttcccagataaaggatactcctttgtacggttcaattctcatgaa
agcgctgcacatgcaattgtttcagtcaatggcacaactatagaaggacatgttgtgaaa
tgttactggggcaaagaaacaccagatatgataaatccaatccaacagcagaatcaagtg
ggatacccaccgccttatggacagtggggtcagtggtatggaaatgcgcagcagattggc
cagtacatgcctaatggctggcaggtccctgcgtatggaatgtatggacaagcatggaat
cagggattcaatcagacacagtcttctgcagcatggatgggtgcaaattatggtgtgccg
cccccacccccaccgccgccgcccccaccccaggggcaaaacggaagcgttctaactagt
caaactggatatcgaatggcaggttttgaaacacagtga
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