Podarcis raffonei (Aeolian wall lizard): 128420078
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Entry
128420078 CDS
T09310
Symbol
SNRNP200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128420078 (SNRNP200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
praf03041
]
128420078 (SNRNP200)
Enzymes [BR:
praf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128420078 (SNRNP200)
Spliceosome [BR:
praf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
128420078 (SNRNP200)
Complex C
U5 SnRNP specific factors
128420078 (SNRNP200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
AAA_16
DUF603
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
128420078
NCBI-ProteinID:
XP_053257468
LinkDB
All DBs
Position
8:89781905..89837014
Genome browser
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTK
PQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT
DYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVRDEASDDDMEGDEAVVRCTL
SANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMESDPELSKFL
YQLHETEKEDLIREERSRRERVRQSRMDTDMETMDLDQGGEALAPRQVLDLEDLVFAQGS
HFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVDKLPKYAQAGFEGFKT
LNRIQSKLYRAALETDTNLLLCAPTGAGKTNVALMCMLREIGKHINLDGTINVDDFKIIY
IAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEINATQIIVCTPEKWDIITRKG
GERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYED
VATFLRVEPTKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
GFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVAKLPDM
LNAEVVLGNVQNAKDAVNWLGYTYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTA
ALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNETIQTYNQLLKPTLSEIELFRVFSL
SSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMAD
MVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFKKLPEEVV
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKV
ELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFE
PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESL
YQDKFPFFNPIQTQVFNTVYNSDENVFVGAPTGSGKTICAEFAILRMLLQNLEGRCVYIT
PMEALAEQIFLDWYEKFQERLLKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWK
QRKNVQNVNLFIVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV
AHWLGCSATATFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAIMKHSPKKPVI
VFVPSRKQTRLTAIDILTTCASDVQRQRFLHCTEKDVAPYLDKLNDNTLKETLVNGVGYL
HEGLTSMERRVVEQLFGSGAIQVVVASRSLCWGMNVASHLVIIMDTQYYNGKIHAYVDYP
IYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEI
VTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGVSHRHLSDHLSELVEQTLSDLEQSK
CISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPI
RHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAI
RLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTEKGVE
SVFDIMEMEDEDRNALLQLSDTQIADVARFCNRYPNIELSYEVVEKDGIRSGGPVVVLVQ
LEREEEVTGPVIAPLFPQKREEGWWVVIGDSKSNSLISIKRLTLQQKAKVKLDFVAPATG
THNYTLYFMSDAYMGCDQEYKFSVDVKEAESDSDTD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgtcaccgctcggagcctgcagtacgagtacaaggcgaactctaatcttgta
cttcaagctgatcgctccctgattgacaggacccggcgtgatgaacctacaggagaggtc
ctgtcgttggtggggaagctggaaggaactcgaatgggtgacaaggcccagaggaccaaa
ccccagatgcaggaggagagacgagcaaagaggcggaaacgagatgaggacagacatgac
attaacaagatgaaaggttacactctgctttctgagggcattgatgagatggtgggaatt
atctacaaacccaaaaccaaggagacccgagaaacctatgaagtcttgctgagcttcatt
caggcagctcttggagatcagccccgagacattctctgtggagctgctgatgaagtcctg
gctgtcctcaagaatgaaaaactacgcgacaaggagcgacggaaagaaatcgatctgctg
ctgggacagacggatgacacccgctatcatgtgctggtgaacttgggcaagaagatcaca
gactatggcggggacaaggagatccagaacatggatgacaacattgacgagacctatggg
gtgaatgtgcagtttgagtctgatgaagaggagggtgatgaggatgtttacggtgaagta
cgggatgaggcttctgacgatgacatggaaggagatgaggcagtggttcgctgcaccctt
tcagccaatcttgtggcctcaggtgaactgatgagctccaaaaagaaagacctgcacccc
cgagacattgacgctttctggctgcagcggcaactgagccgtttctatgatgatgccatc
gtatcccagaaaaaagctgatgaagtgctggaaatcttaaagactgccagcgatgacaga
gaatgtgaaaaccagcttgtcttacttctgggttttaatacatttgacttcatcaaagtg
ttgaggcaacacagaatgatgatcttgtactgtaccctcttggctagtgctcagagtgaa
gctgagaaggagaggattatggggaagatggaatctgaccctgagttgtcaaagttcctg
tatcagctgcatgagacggagaaggaagatctgatccgggaagaacgctctcgcagggaa
cgagtccgccagtcccgcatggacactgacatggaaaccatggatctggaccaaggagga
gaggcactggcccctcggcaagttttagacttggaagaccttgtgtttgcccaaggcagt
cacttcatggccaacaagcgatgccagctgccagatggctctttccgcagacagcgcaaa
ggctacgaggaagttcatgttcctgcgctgaagccaaagccctttggttcagaagagcaa
ctacttcctgtggacaagctccccaaatatgcacaggctggatttgagggattcaaaaca
ctgaaccggattcagagcaaactgtaccgtgctgcccttgagacagatacaaatttgcta
ctctgtgcacccacaggtgctgggaagacaaatgtggctttgatgtgtatgctgcgtgag
attgggaaacacatcaaccttgatggaacaatcaacgtggatgacttcaaaatcatctac
attgcaccaatgaggtctttagtccaggaaatggtgggcagctttgggaagcgcttggcc
acttatggcatcactgtggctgagctgactggggaccaccagttgtgcaaggaagaaata
aacgccactcagataattgtctgcactccagagaagtgggacatcatcacccgcaaagga
ggggagcgtacctatacccagctggtgcgcctcattattttggatgagatccacctcctg
catgacgaccggggccctgttctggaagccttggtggccagagccattcgcaacattgag
atgactcaagaagacgtgcggcttatagggctgagtgccaccctcccaaactacgaggat
gtggctacattcttgagggtggagcctaccaaaggcttgttctactttgacaacagtttc
cgcccagtgcccctggaacagacttatgtgggaatcactgagaagaaagcaatcaagcgc
ttccagatcatgaatgagattgtgtatgagaaaatcatggagcatgctgggaagaaccag
gtgctagtgtttgtccactccaggaaggagaccgggaaaactgctcgagccatcagggac
atgtgtctggagaaagacaccctgggtctcttcctgcgagagggctctgcctccaccgag
gtcctgaggacagaagctgagcaatgcaagaatttggagcttaaagacttgctgccctat
ggctttgcaattcaccatgctggcatgaccagggtggaccgaacattggtggaagatctg
tttgcagacaagcacatccaggttttggtatccacagcaactttggcttggggtgtgaat
cttcctgctcacaccgtcatcatcaaggggacacaggtgtacagcccagagaaaggtcgc
tggactgaactgggtgccctggacatcttgcagatgctgggtcgtgctgggagacctcag
tacgacaccaagggcgagggaatcctgatcacttctcatggagagctgcagtattacctc
tcactgctgaaccagcagcttcccattgagagccaaatggtggcgaagctgccagacatg
ctgaatgcagaggtcgtgctgggcaacgtccaaaatgcaaaggatgctgtaaactggctt
ggctatacttatctctacatacgaatgctacgttccccaactctatacgggatatcgcat
gatgacctgaaaggagacccattgttggaccagcgccggctggatttggtgcacactgca
gctctgatgctagataagaacaacctggtcaagtacgacaagaagacagggaacttccag
gttacggagctgggccgcattgccagccactactatatcaccaatgagaccatacagact
tacaaccaactactcaagcccaccttgagtgagattgaactcttccgggttttctcactt
tcttctgagtttaagaacatcaccgtgagagaggaagagaaactggaactgcagaagcta
cttgagcgggtcccaatcccagtgaaagaaagcattgaggagcctagtgctaagatcaat
gtgctccttcaggcctttatctctcagctgaagctggagggctttgctctcatggcagac
atggtgtatgtcactcagtctgctgggcggctcatgcgtgcaatctttgagattgtcctc
aaccgtggttgggcgcagcttactgacaagactttgaacctctgcaagatgattgacaaa
cgaatgtggcaatccatgtgcccccttcgtcaattcaagaaactgcctgaagaggtggtg
aagaaaattgagaagaaaaacttcccatttgaacgactctatgacttgaatcacaatgaa
ataggggagctgattcggatgccaaagatggggaagacaatccacaaatatgtccatttg
ttccccaaactggagttgtctgtccacctgcagcccatcaccaggtccactctgaaagta
gagctgacaattaccccagatttccagtgggatgagaaggtgcatggttcttcagaggcc
ttttggatcctggtggaggatgtggacagtgaagtgatcctacatcacgagtatttcctt
ctgaaggccaagtatgctcaggatgaacacctcatcactttctttgtgccggtcttcgag
cctctccccccacaatactttatccgggtggtctcagatcgctggctctcctgtgagaca
cagctgcctgtgtccttccgacatctgatccttccagagaagtaccctccaccaaccgag
ctgctggacctgcagccactgcctgtctccgctttgcggaacagcgccttcgagagcctc
taccaggacaagtttcccttcttcaatcctatccagactcaagttttcaacacagtctat
aacagcgatgaaaatgtgtttgtgggagctcccacaggcagtggaaaaacgatctgtgct
gagtttgccattctgaggatgttgctgcagaatttggaaggccgctgtgtctacatcaca
ccaatggaagcccttgctgagcagatcttcctggattggtatgagaagttccaagagcgc
ctactcaagaaagttgtcttgctgacgggggagaccagcactgacctgaagctgttgggc
aaaggcaacattataatcagcactcctgagaagtgggacatcctttcccggcgctggaag
cagcgcaagaacgtgcaaaacgtcaacctcttcattgtggatgaagtgcacctcattggt
ggcgagaatgggccggtcttggaggtgatctgttcccggatgcgctacatctcctcccag
attgagcggcccatccgcattgtggccttgagctcatcactgtccaacgccaaggatgtg
gcccactggctgggctgcagtgccacggccaccttcaacttccaccccaacgtgcgccct
gtgcccctggagctacacatccaaggcttcaacatcagccacacccagacccgcctgttg
tccatggccaagccagtctatcatgctatcatgaagcactctccaaagaagccagtgatc
gtgtttgttccatctcgcaagcagacgcgcctcacagccattgacatcctcaccacctgc
gcatcagatgtccagagacaaaggttcctgcactgcactgagaaggatgtggctccctac
ttggacaagctgaatgacaacaccttgaaggagaccctggtgaacggggtgggatacctg
catgagggactgacctccatggagcgaagagttgtggagcagctttttggctcaggtgcc
attcaggtggtggtggcctcgcggagcctctgctggggaatgaatgtagcttctcacctg
gtgatcatcatggacacgcagtactacaatggcaagatccatgcgtatgtggattacccc
atctatgatgtgttgcagatggtgggccatgcaaaccgcccactgcaggacgatgagggg
cgctgtgtcattatgtgccagggatccaagaaggatttcttcaagaagttcctatacgag
cccctgccagtggagtctcatttagaccactgcatgcatgatcacttcaatgctgagatc
gtcacaaagaccattgagaacaagcaggatgctgtcgactatctcacctggaccttcttg
tatcgcaggatgactcagaatcccaactactacaacctgcaaggagtttcgcacaggcat
ctcagtgaccacctgtcagagttggtggagcagacgcttagtgaccttgagcagtccaag
tgtatcagcattgaggatgagatggatgtggcgcctttgaacctgggcatgattgcagct
tattactacatcaactacaccaccattgagctcttcagcatgtccctgaatgccaagact
aaagtgcgagggctgattgaaatcatttccaatgctgctgagtatgagaacattcccatc
cggcaccatgaggacaacctcctgcgccagcttgcccagaaagtgcctcacaagctgaat
aaccccaaattcaacgacccccatgtcaaaacgaaccttctgcttcaggctcatctgtca
cgtatgcagctgagcgcagagctccagtctgacacagaggagattctcagcaaggcaatt
cgtctgatccaagcttgcgtggatgttctgtccagcaacggctggctgagtcctgctctg
gctgccatggagctggcccagatggtcacccaggccatgtggtcaaaggactcctacctg
aagcagctgccccacttcacctctgagcacatcaagcgctgcacggagaagggagtggag
agtgtattcgacatcatggaaatggaggacgaagaccgcaacgccctgctgcagctctct
gatacccaaattgctgatgtggcccgcttctgtaatcgctaccctaacattgagctttcc
tatgaagtggtggaaaaggatggtattcgcagcggagggccagtggtggtactggtgcag
ctggagcgagaggaagaagtcactggaccagtgattgcgcccctcttcccacagaaacgc
gaggaaggctggtgggtggtgattggagactccaaatccaacagccttatctccatcaag
agactgacgctgcagcagaaggctaaggtgaaactggactttgtggcaccagccactggg
actcacaactacaccctctatttcatgagtgatgcctacatgggctgcgaccaggagtac
aagttcagtgtggatgtgaaggaggcggagagtgacagcgatacggattga
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integrated database retrieval system
