Podarcis raffonei (Aeolian wall lizard): 128420245
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Entry
128420245 CDS
T09310
Symbol
SYMPK
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf03015
mRNA surveillance pathway
praf04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128420245 (SYMPK)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
128420245 (SYMPK)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
praf03021
]
128420245 (SYMPK)
03019 Messenger RNA biogenesis [BR:
praf03019
]
128420245 (SYMPK)
Transcription machinery [BR:
praf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
128420245 (SYMPK)
Messenger RNA biogenesis [BR:
praf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
128420245 (SYMPK)
U7-dependent histone pre-mRNA processing factors
128420245 (SYMPK)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
Adaptin_N
Cnd1
Motif
Other DBs
NCBI-GeneID:
128420245
NCBI-ProteinID:
XP_053257799
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All DBs
Position
8:7522065..7548966
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AA seq
1334 aa
AA seq
DB search
MAGVSNMGDSGLSRMSIASQFFAGEETSGIDTMTTSERVVDLLNQAALISNDSKITILKQ
VQELIINKDPTLLDNFLDEIIAFQADKSVEVRKFVIGFIEEACKRDTELLLKLIANLNML
LRDENVNVVKKAILAMTQLYKVALQWMVKSRVINDMQEACWEMVSAMASEIIQLLDSDND
GIRTHAIKFVEALIITLSPRMPESEVPKRHENDISLDRVPEDHPYIKYNVLWEEGKTALD
QLLKFMVHPAISSINLTAALGSLASIARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSV
RKNLKLHLLSVLKHPASVEFQAQITTLLMDLGTQQAEITRNMPNLKELRKRPRDDSDPAM
KKMKMEPNLGEDDEDKDLEQVAAPVPKPSIQVSTQSDTDITAEFLQPLLTPDNVANLVLI
SMVYLPENMPASFQATYTPVESAGTEVQIKHLARLMATQMTAAGLGPGVEQTKQVKESLK
EEKLLKPESVLIKRRFSALNTGQAISVLGAQGSVPSTESGVPQTKRRPEPIIPSTQPRLA
GATGRKKIFRLSDVIKPLTDVQMDKLKLAAVKRILRSEKAVACSGAAHARVKILSSLVTQ
FELPLKSEVLTFILDDIRNRLDLAFAWLYQEYNAYLSQYPSGSLDNYDECLIGLLSGLQE
KPDQKDGIFTKVVLEAPLITESALEVIRKYCEDESRTYLGMSTLRDLIFKRPSRQFQYLH
VLLDLSSHEKDKVRQQALLFIKRMYEKDQLREYVEKFALNYLQLLVHPNPPSVLFGADKD
TEVAAPWTEETIKQCLYLYLALLPQNHKLIHELASVYTEAIADIKRTVLRVIEQPIRGMG
MNSRELLKLVKNCPKGAETLVTRCLHSLTDKVPPSPELVKRVRDLYNKRLPDVRFLIPVL
NGLEKKEVIQALPKLIKLNPIVVKEVFNRLLGTQHGEGNSAVSPLNPGELLIALHNIDST
KCDMKSIIKATNMCFAERNVYTSEVLAVVMQQLMEQNPLPMLLMRTVIQSLTMYPRLGGF
VMNILSRLILKQVWKYPKVWEGFIKCCQRTKPQSFQVILQLPPQQLTAVFEKCPELREPL
LAHVRSFTPHQQAHVPNSTMAILEASNKQDLEGKELQPLEEARGSAPPRTKELRREKEEE
MEPQPLLPRVSQDMIALRLAQEKALKRQLEEEQKLKQQQQPPRPAAPQTPLPSEESVDLQ
EEVPEAETPTIFISMQEEDESFGGDSSQLDSSLEGPWPPKELQSKEGAASSSSSSSSSSS
SSSSSSSSSGSSDEGSSSKPPTAKQATLSLEEEEPAADGGAPPPAPSAALAANSPSPAEE
LPDPVVEQEEKADS
NT seq
4005 nt
NT seq
+upstream
nt +downstream
nt
atggctggcgtaagcaacatgggcgactctggcctgtcccgcatgagcatcgcctcccag
ttctttgccggggaggagacgtctggcatagacaccatgactacctcggagagggtggtg
gatttgctaaatcaagctgccttaatcagcaacgattccaaaatcacaatcctcaaacag
gtccaggaattgattataaacaaagatcccacactgttggataatttcctagatgagatc
attgctttccaggcagacaaatctgttgaggttcggaagtttgtcatcgggttcatagag
gaagcctgcaaacgggacaccgagctgctgctcaagcttattgccaacctcaacatgctg
ttgagggatgagaacgtcaatgtggtgaagaaagccatcctcgccatgactcagttgtat
aaggtggcgctgcagtggatggtgaaatccagagtgatcaacgacatgcaggaggcctgc
tgggagatggtgtccgccatggccagtgaaatcatccagctgctggactcggacaacgac
ggcatacgcacccacgccatcaagttcgtggaggcgctgatcatcaccctctctccccgg
atgccggagtcggaggtgcccaagcgccacgagaacgacatcagcctcgaccgggtccct
gaggaccacccctacatcaaatacaacgttctgtgggaagaagggaagacagcgctggac
cagctgttgaagttcatggtccacccagccatctccagcatcaacctgaccgccgcgctg
ggctccttggcctccatcgcccgccagcggcccatgttcatgtcagaggtgatccaggcc
tatgagacactgcacgccaacctccccccgacgctggccaagtcccaggtgagcagcgtg
cggaagaacctcaagctgcacctgttgagcgtcctcaagcacccggcctccgtggagttc
caggcccagatcaccaccctgctgatggacctgggcacgcagcaggccgagatcacccgc
aacatgcctaacctgaaggagctccgcaagcgcccgcgggatgatagcgaccctgccatg
aagaagatgaagatggagccaaatcttggggaggatgatgaggataaagacctggagcag
gtggcagccccagtccccaagccctccatccaagtcagcacacagtcggacacggacatc
accgctgagtttctacagccccttctgactccagataacgtggccaacctggtgctcatc
agcatggtgtacctgcctgaaaacatgcctgcttccttccaagccacctataccccagtg
gaatctgctggcactgaggtccagatcaagcaccttgcccgcctcatggccacccagatg
acggcagctgggctagggccaggtgtggagcaaaccaagcaggtcaaggagtcgctgaaa
gaagagaaattgctcaaaccggaaagcgtgctgatcaagcggcgcttctctgctcttaat
acaggccaggccatttctgtgttgggagcccagggctctgtcccctccactgagtctggg
gtgccgcagaccaagcggcgcccagaaccaatcatcccttccactcagcccaggttggcc
ggtgccaccggccgtaagaagattttccgcctgagcgacgtgatcaagcctctcacggac
gtgcagatggacaagctgaagctggcggccgtgaagcggatcctgcgctccgagaaggcc
gtggcctgcagcggggctgcccacgcccgggtgaagatcctctcttctctggtgacccag
ttcgagctccctctcaagagcgaagtcctgaccttcatcctggacgacatccgcaaccgc
ctggacctcgccttcgcctggttgtaccaggaatacaatgcctacctgagccaatacccc
tctggctcgctcgacaactacgacgagtgtctcatcggcttgctctccggtctgcaggag
aagccggaccaaaaagatgggatctttaccaaggtggtacttgaggccccactgatcacc
gagagtgccctggaagtgattcggaagtactgcgaagatgagagccggacatacctgggc
atgtcaacgcttcgggacctgatcttcaagcgcccgtcgaggcagttccagtatctgcat
gttctcttggatctcagctcccacgagaaggacaaggttcgccagcaagcgctgctattc
atcaagcggatgtacgagaaggaccagctgcgggaatatgtggagaagtttgcactgaat
tacttgcagctcctggtccaccccaatcctccctctgttctctttggcgcagacaaagac
acagaggtggctgctccctggacagaagagaccatcaagcaatgcctctatctctacttg
gctctccttccccagaaccacaaactgatccatgaactggcgtctgtttatacggaggcc
attgccgacatcaagcggactgtcctcagggttattgagcagcctatccgtgggatgggg
atgaattcccgggagctgctcaagctggttaaaaactgccccaaaggtgcagagaccctg
gtgacccgctgcctgcacagcctaacggacaaagttcccccctctccggagcttgtgaag
cgagttcgagatctgtacaacaagaggctcccggatgtccggttccttatccctgtcctc
aatggtttggagaagaaagaggtcatccaggccttgccgaagctcatcaagctgaatccc
attgttgtgaaggaggttttcaaccgcctgttgggaacgcaacacggtgaaggcaactct
gcagtttctcctctaaatcctggggagttgttgattgccctccacaacatcgactccacc
aagtgtgacatgaagtccatcatcaaagccaccaacatgtgctttgctgagcgcaacgtg
tacacctctgaggtgctggccgtggtgatgcagcagctcatggagcaaaacccgctgccc
atgctccttatgcggaccgtgatccagtcactgacgatgtacccacgcctgggcggcttt
gtcatgaacatcctctcccgactcatcttgaagcaggtgtggaagtaccccaaggtctgg
gagggcttcatcaagtgctgccagcggaccaagccccagtccttccaagtcatcctccag
ttgcctcctcagcagctcaccgccgtctttgagaagtgcccagagctgcgggagcctctg
ctggcccatgtccgctccttcaccccgcatcagcaagctcatgttcccaattccaccatg
gccatcctagaagccagcaacaagcaagaccttgaagggaaggagttgcagcctctggag
gaggcgaggggctcagccccgcccaggaccaaggagctgagaagagagaaagaggaagaa
atggagcctcagcctctcctgcctcgcgtgtcccaggatatgattgccctgcgcttggcg
caggagaaggccctcaagcgccagctggaagaggagcagaaactgaagcagcagcagcag
cctccccgcccggcagccccccagaccccactcccttccgaggaatctgtggacttgcag
gaggaggtgcctgaagcggagactcccaccatcttcatcagcatgcaggaggaagacgag
agctttggaggagacagctcccagctggattccagcttagagggcccctggccacccaag
gagctgcagagcaaggaaggagcagccagcagtagcagcagtagtagcagcagcagcagc
agtagcagtagtagtagcagcagcagcggcagctcggatgagggatcctcaagcaagccg
cccacagccaagcaagccaccctctccctcgaggaagaggagccggccgcagacggtggg
gcaccacctcctgccccctccgctgctctggctgcaaactctcccagcccagcagaggag
ctgccggaccccgttgtggagcaagaggaaaaagcagacagctga
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