Podarcis raffonei (Aeolian wall lizard): 128421262
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Entry
128421262 CDS
T09310
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf03030
DNA replication
praf03410
Base excision repair
praf03420
Nucleotide excision repair
praf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
128421262 (RFC1)
03410 Base excision repair
128421262 (RFC1)
03420 Nucleotide excision repair
128421262 (RFC1)
03430 Mismatch repair
128421262 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
praf03032
]
128421262 (RFC1)
03400 DNA repair and recombination proteins [BR:
praf03400
]
128421262 (RFC1)
DNA replication proteins [BR:
praf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
128421262 (RFC1)
DNA repair and recombination proteins [BR:
praf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
128421262 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
AAA_22
BRCT_2
AAA_14
AAA_30
AAA_5
Rad17
RuvB_N
AAA_19
AAA_17
RNA_helicase
PTCB-BRCT
AAA_16
AAA_18
AAA_33
Zeta_toxin
nSTAND3
AAA_7
NPHP3_N
TIP49
NTPase_1
Motif
Other DBs
NCBI-GeneID:
128421262
NCBI-ProteinID:
XP_053259797
LinkDB
All DBs
Position
9:25805485..25842724
Genome browser
AA seq
1145 aa
AA seq
DB search
MDIRKFFGAVIPRNKQECDTTRKNEKPQNKEGASGEKSKLKETKVKNSSRGEDSGHKQVN
KKKRIIYDSDSEEEVQVVKKSKKPPDRKQSSRPDVILKKDPVVYVSETDEEEDFVNKKVA
PKPKENGTSVAIRFGTSGASKTDPKPKLKNKPLSPVKLTPTSVIDYFGTGSIQRSEKKLV
SSKRKELSQSRDPTLDDEAVARQLQLEENTELERQLHEDEEFARTLAMLDETPKKKKPRK
DPEEKQITSTVKTSPAEAEKHKQAPKVKPASSTVDTRPNSAKDQVCSESAKTLSQHPESS
VSKERKDLGNKLLPSKPSSKLAVLKQKSESIKVENGTPKEETIKNESRTPKVKSVLPEET
PRKEKVTPPKSKSVSPEDSEKKRANYQAYRSYLNREGPRALGSKEIPQGGENCFEGLTFV
ITGILESIERDEAKSLIERYGGKVTGNISKKTDYLVKGRDCGAAKTDKALALGTKIIDED
GLFDLIRSMPGKKSKYEVAAEAEAKKAKSKCVKTPPKTEVERRKISPSTRESEPKKKKVT
PEKDNTVRSPKKQTMEARRGLDFDQKAPEKKDPKDVGSPIQKGSKGGAEVLLWVDKYKPT
SLKTVIGQQGDQSCANKLLRWLRNWHRNISQDKHAKPSKFGVKDDGASSKAALLSGPPGV
GKTTTASLVCEELGLSYVELNASDTRSKNSLKEVVAESLNNTSIKEFCSGTSSSVSTKHV
LIMDEVDGMAGNEDRGGIQELIDLIKHTKVPIICMCNDRNHPKMRSLVHYCFDLRFHRPR
VEQIKGAMMSIAFKEGLKIPPPAMNEVILAANQDIRQVLHNLSMWCAGSKSLTYDGVKED
ASKAKKDIKMGPFDVVRKVFATGEETSHMSLIDKSDLFFHDYSLAPLFVQENYIHVTPAA
AGGNMKKHLVLLSKAADSICDGDLVDRQIRSRQNWSLLPTQAIYSSVLPGELMRGYMKQF
PNFPSWLGKFSSTGKHDRIMQELSMHMSLRTHASKRAVNLDYLSYLRDAIVKPLTCLGTD
GVQDAVAFMDTYCLMKEDVESIMEVTSWGGKPSEFSKVDSKVKSAFTRAYNKEAHLTPYS
LQVVHKANRRAGSSVDEELEAEEIPSENEQDTIENDAMIKKTTKTAKQPKRNGDVKKGKA
KKKSK
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atggatatccggaaattctttggagcagtaattcctagaaataaacaagaatgtgacact
accagaaagaatgagaaaccccaaaataaggagggggcttcaggtgaaaagtcaaaattg
aaggaaaccaaggtgaagaattcatctcgtggagaggattctgggcacaaacaggtgaac
aagaaaaagaggataatctatgattcagattctgaagaggaggtccaggtggtgaagaaa
tctaagaagccgccagatagaaaacagtcttcaagacctgatgtgattctaaagaaggac
cctgttgtttatgtctcagagacagatgaagaagaggattttgttaataagaaggttgct
cccaaacccaaggaaaatgggacatctgtggctattcgttttgggacatctggagcatca
aagactgatcccaaaccaaaactgaaaaataaacccctatcgccagtaaaactgacacca
acctctgtaattgattactttggaactggtagcattcagcgatcagagaagaaactggtg
tcaagcaaacgaaaagaactgtcacaaagcagggatcccacactagatgatgaggctgtt
gccaggcagctacagcttgaagagaatacagagttggagaggcagctgcacgaagatgaa
gaatttgccagaactctggccatgctggatgaaacaccaaagaagaaaaagcctcgaaaa
gatccagaagagaaacagataacttcaacagtcaaaactagtccagctgaagcagaaaaa
cataaacaggctcctaaagtaaaacctgccagttcaactgtggacacaagacctaattct
gcaaaggaccaggtttgctcagaaagtgcaaaaacattgagtcagcaccctgagtcttct
gttagtaaagagaggaaggatttggggaataagctgttgccctcaaagccgagttccaag
ttggctgtgctgaagcaaaaatcagaaagtattaaagtagaaaatggaactccaaaagaa
gaaacgataaaaaatgaaagtaggactccaaaagtaaagtcggttttaccagaggagaca
cctagaaaggagaaggttactcccccaaaatctaagtctgtaagtcctgaggactctgaa
aagaagcgagccaactatcaagcttatagaagctatcttaatcgtgaaggcccaagagcg
cttggctctaaggagatcccacaaggaggtgaaaattgctttgaaggcctgacgtttgtg
atcacaggcatcttggaatccattgaacgcgatgaggccaaatctctgattgagcgctat
ggagggaaagtaactgggaatatcagcaagaagacagactatcttgtgaagggtcgtgac
tgtggtgcagccaagactgacaaggccttagctttagggacaaaaataattgatgaagat
ggtttatttgacctgattcggagtatgccaggcaagaagtcaaagtatgaagtggcagct
gaagctgaggcaaagaaggccaaatccaagtgtgtgaaaaccccaccgaaaactgaagtg
gaaagaagaaaaattagcccttcaactagagagagtgaacccaaaaagaaaaaagtcact
cctgaaaaggacaataccgtcagatctcccaagaagcaaacaatggaagcaaggagaggt
ctggactttgatcagaaagcaccagagaaaaaggatccaaaggatgttgggagcccaatt
caaaaaggcagtaaaggtggagctgaggtgttattatgggtggacaaatacaagcccaca
tcccttaaaacagtcattgggcaacaaggcgaccaaagctgtgccaataaactcttacgt
tggcttcgaaactggcacaggaatatttcgcaggacaaacacgcaaaacccagtaagttt
ggagtcaaagacgacggtgctagttcaaaagcagctttgctgtctggccccccgggggtt
ggcaaaacgaccacagcttcactagtttgcgaagaactgggcttgagctatgtggaatta
aatgccagcgacactcgcagtaagaacagcctgaaggaggtggttgccgaatctctaaat
aacaccagcatcaaagagttctgttcaggtacatcatcttcagtcagcacaaagcatgtc
ctaattatggatgaggtggatggaatggctggcaacgaagacaggggaggcatccaggaa
ctgattgacctgattaaacatacaaaggttcctataatttgtatgtgtaatgatcggaat
cacccaaagatgcgttcccttgtccactactgctttgatcttcgctttcacagaccacgc
gtggagcagattaagggtgccatgatgtccattgcctttaaagaggggttaaagattcca
ccaccagcaatgaatgaagtcatcttggcagccaatcaggatatcagacaagttttacat
aatctcagcatgtggtgtgcagggagcaaatctctgacctacgatggtgtcaaagaggat
gctagcaaagcaaaaaaggacatcaaaatgggcccttttgatgttgtcaggaaggttttt
gctaccggagaagagacctctcacatgtcccttatagacaaatcggacctcttcttccac
gattactctctcgccccgctctttgtccaggagaactacatccacgtgaccccagctgct
gcagggggtaacatgaagaaacacctggtgttgcttagcaaagcagctgacagtatttgc
gatggcgacttagttgaccggcagattcgcagccgacaaaattggagccttctacctacg
caggccatttattcaagtgtcctccctggggagctgatgagaggctacatgaaacaattc
ccaaatttcccaagctggctgggcaaattttcatcaacaggaaagcacgaccgtatcatg
caagagctgtcgatgcacatgagcctcaggacacatgcaagcaagagagcagtaaatctg
gactatttgtcatacttacgagatgcaattgtgaaacctttgacatgcctgggaacagat
ggagtgcaggatgctgtagcatttatggatacttactgcttgatgaaggaagatgtcgaa
agcataatggaagtaaccagttggggaggcaaacctagtgaattttctaaagttgattcc
aaggttaaatctgccttcacacgagcctataacaaagaggcccaccttacgccatattct
ctgcaagtggtgcataaggcaaatcgacgagcaggatcgtcggtggatgaagaactggaa
gctgaagaaatcccgtctgagaacgagcaagacactattgaaaatgatgcaatgattaag
aagacaaccaagactgctaagcaaccaaaaaggaacggagatgttaaaaaggggaaagcc
aagaagaagtctaaataa
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integrated database retrieval system
