Podarcis raffonei (Aeolian wall lizard): 128421882
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Entry
128421882 CDS
T09310
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
praf03016
]
128421882 (RTCB)
Enzymes [BR:
praf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
128421882 (RTCB)
Transfer RNA biogenesis [BR:
praf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
128421882 (RTCB)
Prokaryotic type
tRNA splicing ligases
128421882 (RTCB)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
128421882
NCBI-ProteinID:
XP_053261145
LinkDB
All DBs
Position
10:51120310..51128987
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKLDKHCWRIKKGFVPNMNVEGVFYVNDPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
QEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGTTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgaagctacaacgatgagctgcagtacctggacaagctggacaagcactgctgg
cgtatcaagaagggcttcgtgcccaacatgaacgtggaaggtgtcttctacgtgaacgat
cctttagagaagttaatgtttgaagagttaagaaatgcatgcagaggtggaggagctggt
ggcttcctcccagccatgaaacaaatcggaaatgtagctgcactgcctggcattgttcat
agatctataggacttccagatgtccactcaggctatgggtttgccattggtaacatggct
gcctttgatatgaatgacccagaagcagtggtatcaccaggtggtgtcggattcgacatt
aactgtggcgtacggctcttgcgcaccaatcttgatgagagtgatgtccaacctgtgaag
gaacagcttgctcaggccatgtttgaccacattcctgttggtgtggggtccaagggtgtc
attcctatgaacgccaaggatttagaggaggcactggagatgggggtagattggtccctc
cgagaaggctatgcctgggctgaggataaagagcactgtgaagaatacgggaggatgctg
caagctgatccaaataaagtctctgcgagggctaagaaaaggggtttgccccagctgggg
actttgggagcaggaaaccattatgctgagatccaggttgtagatgaaatttttaacgaa
tatgctgccaagaagatgggcatagaccacaagggccaagtttgtgtgatgatccacagt
ggcagcagaggccttggccaccaagtagctacagatgccctagtggctatggaaaaagct
atgaaacgagacaagatcatagtgaacgaccgccagctggcatgtgccaggattgcttcc
caggagggacaggactacttgaagggaatggcagcagctggaaactatgcatgggtcaat
cgttcttccatgactttcctcaccagacaggcttttgctaaagtcttcaataccacccct
gatgatctggatctgcatgtgatctatgatgtatctcacaacattgccaaagtagagcag
catgtggtagatggaaaagaacggaccctgctggtgcaccggaaaggaacaaccagagct
ttccctcctcaccaccccctcattgcggttgattaccagctaactggccagcctgtcctg
attggtggaacaatgggaacttgtagctatgtccttactggtaccgaacaaggcatgact
gaaacctttggtaccacctgccatggagcgggccgtgcattgtcacgtgcaaaatctcgg
cgcaacttggatttccaggacgtattggacaagctggcggacatggggattgcaatccgg
gttgcatcccccaaactggttatggaagaagcacctgaatcttacaagaatgtgacagat
gtggttaacacctgccatgcagctggcattagcaagaaagccattaaactgagacccata
gcagtgatcaaaggctaa
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