Podarcis raffonei (Aeolian wall lizard): 128422622
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Entry
128422622 CDS
T09310
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf03013
Nucleocytoplasmic transport
praf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128422622 (UPF2)
03015 mRNA surveillance pathway
128422622 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
praf03019
]
128422622 (UPF2)
Messenger RNA biogenesis [BR:
praf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
128422622 (UPF2)
mRNA cycle factors
P-body specific factors
128422622 (UPF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
128422622
NCBI-ProteinID:
XP_053262803
LinkDB
All DBs
Position
10:complement(1451309..1511576)
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AA seq
1329 aa
AA seq
DB search
MPGKRPPLFSAARPGKGPRLPICLGNIMPAERKKSASMEEKETSLSNKDKEFNERRSGSS
RDKPKEDVRLGMKREMLKPPEDKKKKLEEEKRKKEDKERKKKDDEKIKSEEEQKKKEEEE
KQKLEEEERKKQEEEVKRQQEEAAAQLKEKEEAHQLHQEAWERHQARKELRSKNQNASDS
RPEENFFSRLDSSLKKNTAFVKKLKTITEQQRDSLSHDFNGLNLSKYIAEAVASIVEAKL
KISDVNCAVHLCSLFHQRYADFAPSLLQVWKKHFEARKEEKTSNITKLRTDLRFIAELTI
VGIFTDKEGLSLIYEQVKNIINADRESHTHVSVVISFCRHCGDDIAGLVPRKVKSASDKF
NLSFPPSEIISPEKQQPFQNLLKEYFTSLTKHLKRDHRELQNIERQNRRILHSKGELSED
RHKQYEEFAMSYQKLLANSQSLADLLDENMPDLPQDKPVPEEHGPGIDIFTPGKPGEYDL
EGGIWEDEDARNFYENLIDLKAFVPAILFKDNEKCSQIKDSGKDDSRELKETKENKDVSG
TDDLELDLENLDINDDALELDCGDEAEDLTKKLLDEQGKKQGADSTGAENSDGKQAARKQ
EDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANRRKLVRALFIVPR
QRLDLLPFYARLVGTLHPCMSDVAEDLCSMLKGDFRFHVRKKDQINIETKNKTVRFIGEL
TKFKMFSKSDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESHLRTSVLLEQMMR
KKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYIRKLLYKDLSKVTTEKVLR
QMRKLPWHDPEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDVGIHVVDGVLEDI
RLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGVNSDGTSSPLDPP
EHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLDVWTKDHPFPIDID
YMISDTLELLRPKIKLCNSLEESVRQVQELEREFLIKLGLVNDKDSKESITEGENLEEDD
EEEEGGVEIEEQSGNESEINEPEEEEGSDNDDEEGEEEEEENTDYLTDSNKENETDEENT
EVMIKGGGLKRVPCAEDEDFIQALDKMMLENLQQRSGESVKVHQLDVAIPLHLKSQLKKG
PPLGGGEGESESGDTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQQQAEQEERMRMK
KLTLDINERQEQEDYQEMMQSLAQRPAPANTNRERRPRYQHPKGAPNADLIFKTGGSLSV
LLLVVELKW
NT seq
3990 nt
NT seq
+upstream
nt +downstream
nt
atgcctggcaagcgtccgcccctgttctcagcagcccgtcctgggaagggaccgcgtctg
ccgatctgcctgggtaacataatgccagcagagcgtaagaaatcggcaagcatggaagaa
aaagaaacatcattaagtaataaagataaggagttcaacgagaggcggtcaggtagcagc
cgggacaaacccaaagaggatgtcaggcttggcatgaagagagaaatgttaaaaccacct
gaagataaaaagaaaaaactggaggaggagaaacggaaaaaagaagacaaggagcggaag
aaaaaagatgatgagaagataaaatctgaagaagagcagaagaagaaagaggaggaagaa
aagcaaaaacttgaagaagaggagagaaaaaagcaggaagaagaagtaaagcgacaacaa
gaagaggcagctgcccagctgaaagagaaagaagaagcccatcagctccaccaagaagct
tgggagcgccaccaagcaagaaaggaactccgaagtaaaaaccagaatgcatcagacagc
cgccctgaagagaacttctttagcaggctggattcaagtctcaagaagaacactgccttt
gttaagaagttaaaaactatcacagaacagcagagagactccttgtcccatgactttaat
ggcctcaatttaagcaagtacattgcagaggctgttgcttctatagtggaagcaaaactg
aaaatatcagatgtgaattgcgctgtgcacttgtgttctctgttccatcaacgttatgct
gattttgctccatcactacttcaagtctggaagaaacattttgaagccaggaaagaagag
aagacatccaacattactaaactaagaacagacttgcggtttattgcagaattgacaata
gttgggattttcactgataaggaaggcttgtctttaatctatgaacaagtaaaaaacatt
attaatgctgatcgcgaatcccacacccatgtctcagtggttattagcttttgtcggcac
tgtggagatgacattgctggattggtaccaaggaaggttaaaagtgcatcagataaattt
aacttgagttttcctcccagtgaaatcattagcccagaaaaacaacagcctttccaaaat
ctgctgaaagagtactttacatctttgaccaaacatctgaaaagggaccacagggaactg
caaaatattgaaagacaaaacaggcgtattctgcactctaaaggagagttgagtgaagat
cggcataagcagtatgaagaatttgctatgtcctatcaaaagttgttggcaaactcccag
tctttagctgatctcctggatgaaaatatgcctgatctcccacaggataaaccagtgcct
gaagaacatgggcctggcattgacatttttaccccaggcaaacctggtgaatatgatttg
gaggggggcatctgggaggatgaagatgctcgaaacttctatgagaacctaattgattta
aaagcatttgtgccggctattttgttcaaggataacgaaaaatgttcccagattaaggac
tctggtaaagatgattctagagagttaaaagaaactaaggaaaacaaagatgtgtctggt
actgatgatctggagttggacctggagaatctggacattaatgatgatgctcttgaatta
gactgtggtgatgaagcagaagatctcacaaaaaagcttcttgatgaacaaggcaagaaa
cagggagcagatagcaccggagctgaaaatagtgacggaaagcaagctgcacgaaaacaa
gaagatgaagaagccagtaccgggtcacatttgaagcttatagtagatgcttttcttcag
cagctcccaaactgtgtaaatagagacctaatagacaaggcagcaatggatttttgcatg
aacatgaatacaaaagcaaataggcggaagttggttcgtgctctcttcatagttcctcgt
caaaggctggatttgctaccattttatgcacggctggttggtacattacatccttgtatg
tctgatgtagcagaggatctctgttccatgctaaaaggtgacttcagattccatgtgaga
aagaaggaccagatcaacattgaaacaaagaataaaactgtgcgattcattggtgaactt
actaagtttaaaatgttctccaaaagtgacactctgcattgcttaaagatgctcttgtct
gacttctctcatcaccatattgaaatggcatgtacattattggagacttgtggtcgattc
ctgttcagatctccagaatctcatttgagaactagtgtccttttggaacaaatgatgcga
aagaaacaagcaatgcacctggatgcacgctatgtcaccatggtggaaaatgcctactac
tactgcaatcctcctcccgctgagaaaacagtgaaaaagaaacgccctcctctccaggag
tatattcggaagctcctttataaggatctctccaaagtcactactgagaaggtcctgaga
cagatgcgcaaattgccctggcatgaccctgaagtgaaagactatgttatatgttgtatg
atcaacatctggaatgtgaaatacaatagtattcactgtgtagccaaccttttagcagga
ctggtactttaccaagaggatgttggaattcatgttgtggatggtgtcctagaggatatt
cggctaggaatggaggttaatcagccaaaatttaaccagcggaggatcagcagtgccaag
ttcttgggtgaactgtacaattacagaatggtagagtcggcagtaatatttcgaactctg
tactcctttacatcatttggtgtgaattcggatggtacatctagcccacttgatcctcca
gaacatcttttccgcattcgactggtgtgtaccatccttgacacttgtgggcaatacttt
gacagaggatccagcaaacggaaacttgactgcttcctggtctatttccagaggtatgtt
tggtggaagaaaagcctggatgtttggacaaaagatcacccgttccctatagacattgac
tatatgatcagtgatacattagaattactgagaccaaagataaaactgtgcaattccctg
gaagaatctgttaggcaggtacaagaactggaaagggaattcttaatcaaactaggcctt
gtgaatgacaaggactctaaagagtcaattactgagggagagaaccttgaggaagatgat
gaggaggaagaaggtggagttgagatagaagagcaatctggaaatgaaagtgaaataaat
gagccagaggaggaggagggctctgataatgatgacgaagagggagaagaggaggaagaa
gaaaatactgattatctcacagactctaataaggaaaatgaaactgatgaagaaaatact
gaagtcatgattaaaggaggtggacttaagcgtgtcccatgtgctgaagatgaagacttc
attcaggcattggacaaaatgatgcttgaaaatttacagcaaaggagtggggaatcggtg
aaagtgcatcagttagacgttgcaattcccttgcatctcaagagccagctcaagaagggc
ccacccctgggtggtggggaaggagagtctgaatctggagacaccatgccttttgtcatg
ttaactcgaaaaggcaacaagcaacagtttaagatcctaaatgtgccaatgtcgtctcaa
ttggctgcaaatcactggaatcaacaacaagctgagcaagaggagaggatgagaatgaaa
aaattgacattggatatcaatgaacggcaggaacaagaggactatcaagagatgatgcaa
tccttggctcagcggccagctccagcaaataccaacagggaacggcggcctcgctatcag
catccaaagggagcacctaatgccgatctaatctttaaaactggtggaagtttgtctgtg
ttgctgttggtggtggaactgaaatggtga
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