Podarcis raffonei (Aeolian wall lizard): 128423028
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Entry
128423028 CDS
T09310
Symbol
SKIC3
Name
(RefSeq) SKI3 subunit of superkiller complex protein
KO
K12600
superkiller protein 3
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128423028 (SKIC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
praf03019
]
128423028 (SKIC3)
Messenger RNA biogenesis [BR:
praf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
128423028 (SKIC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_19
TPR_16
TPR_1
TPR_14
TPR_12
TPR_17
TPR_8
TPR_11
TPR_CcmH_CycH
ANAPC3
TPR_9
TPR_15
Nipped-B_C
ARM_TT21_C
ARM_TT21_N
BTAD
Fis1_TPR_C
HEAT_Nup120
ARM_TT21_5th
ARM_TT21_2nd
TPR_30
TPR_5
TolB_N
ARM_TT21
DUF7017
TPR_20
Motif
Other DBs
NCBI-GeneID:
128423028
NCBI-ProteinID:
XP_053263667
LinkDB
All DBs
Position
11:complement(36969383..37013799)
Genome browser
AA seq
1567 aa
AA seq
DB search
MSNKEVKAALKSARDAIRNKEYKEALKHCKAVLKQEKNNYNAWVFIGLAAAELEQPDQAR
GAYRKAAELEPGQLLAWQGLANLYEKTNHADVGEDLVNVYQKLLELYESTDKQKWCEVCR
KLVELYQRERKYLQVARTWQKLIKIRQEEGAEKAELHQLWKRLVQLLEEGTHLQDNETQQ
LLLNAFEEAVNSSDPIPSEEHQKTYREFIHCLSKFPHEDFRLKKACEDMMILYPAASYPL
EVLCLRFIQSGSFTDEALNCCRKLLDIDPRSGPALIGLGIQSLQGKKYDEGEKKLTEGLQ
QTSQCPEAWCYLGKAQVKMHKYKEAVLSCNQALKILGQLNESSSSQQQKNLAHRFKAMAL
IKIPGVDSAKEAISSLEQVLDRNNDPKLIALKGEACLNKGLVDEALKIAQELKQTHPDLA
EADYLEGLIHYQQKNYHQAEASFQRAIEKEAEIADFHFCLGLTYWFMSEDTRKNKSKALT
QFLKAAKLDNYLGSAFHYLGQYYRDIAGDKNRALGCYKKAFEKDKTDGEAGAAVVDLSTE
LGDLQTALAILTEVTERASAGRAKWAWLRRGLHYLRAGQHSQAVADLQAALRADPKDPHC
WESLGEAYLSRGGYTTALKSFRKARELNPKSIYSIYKAAAIEQILGKYKDAIAEYQHILT
KSKDYVPALKGLGECYLMVAKTALADYLDGKALDYIEQSLGFLARAAKHRPEVSCLWKLL
GDACSSVSVISPSKVNVKVLGFLIGQNTDKCVLKKSDLLSLGGRCYGRGLKLMSSPNTWC
DLGINYYHQAQHLTEMGSNKNEISELLEKSVQCLKKSVRLDSNNHLYWNALGVVACCKGV
GNYALAQHAFIKSIQAEQINVVAWTNLGVLYLTTGNIEQAHEAFKVAQSLEPSYLTCWIG
QALIAETVGSYETMDLFRHTTELRMHTEGAKGYAHWVCSTLQDKTNRNTELYKYNILQMN
AIPTAQIALTKYTERIQNDACAFIMLGYLNEYLQLKKQAVDAYQRAVLLLKNSEDKEKYC
IAMRNYGRALCALGHYDDAIQAYLLTRLTEFDDILGIAQAYFKKGHFQESQKAYERALSV
AECEQDKAYILTALAIMEYKQDQVDDAKTLLFKCSILQEPNLGSLQALCALGLIRQDATL
ATAALKELLKLTERKDDVYERCLLTSAVYALQGRNLAVQRQVSKAVHSNPDNPALWSLLS
QLVPRYTPQNAKGGAAAGTIAHIHDLNHGKRALLNTAVNQLALGCHTAESKKNNPLKNIQ
KAVHLSPDNPASWAVLLAACHAENTIVCLHNTQPKRTDLEKTIVATISAKIKDKDLPTSY
AQALEEWSLFQAVTSLNETGRTSEAEALCTKGLKIFPEQPTLYLLLRQVQCKPLWQSHKE
LPDAILEELRKAVMSNSTSVTAWHWLAQVYQSQGMMVAAEMCYRKSLQLASQQGHWSGKL
SSLLRLAKLALEICMGNISNDHWPSLVQEATTEALKLSFCPLGVLLQALLQYNRKMGSRE
TRRILERVVYQPGYPETVASVARWYLLRHLYAKDDYELIDALVANAKANGDVRALELDKK
LSAAAAS
NT seq
4704 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacaaggaagtgaaagcagcattgaaaagtgccagagatgctataaggaataag
gagtacaaagaagcactgaaacactgcaaggcagtattgaaacaggagaagaataactac
aatgcctgggtattcattggtttggcagctgctgagctagaacaacccgatcaagcccga
ggtgcctacagaaaagctgctgaacttgaaccagggcagttgctagcatggcaaggctta
gcaaatttatatgaaaaaacaaaccatgcagatgtcggagaagatttagttaatgtgtat
cagaaactcctggaactctatgaaagcactgataaacagaaatggtgtgaagtatgcaga
aagcttgtggagctgtatcaaagagagagaaaataccttcaggtggctcggacgtggcag
aagctaataaaaatacgacaggaagaaggtgcagaaaaagctgagcttcatcagttatgg
aagaggttggtccagttactggaagaaggcacacatctccaggataatgagacacagcaa
ttgctcctcaatgcatttgaagaggctgtgaattcctcagacccaattccaagtgaagag
catcaaaagacttacagagagttcattcattgtttgtcaaaatttcctcatgaggatttc
agactgaagaaggcctgtgaagatatgatgattttgtatcctgctgcgagttatcctctg
gaagttctttgcttgcgattcattcaatcaggcagtttcactgatgaggccctgaattgt
tgtcggaaactgttggatattgacccaagaagtggcccagcccttattggattagggatt
caatctctccaaggaaaaaagtatgatgaaggtgaaaaaaagctaacagaaggtttgcag
cagaccagccagtgtccggaagcatggtgttacttaggaaaggcacaagtgaaaatgcat
aaatacaaagaagctgttctttcttgcaatcaagctttaaagatattgggacaacttaat
gaatccagttccagtcagcagcagaaaaaccttgcccatcgcttcaaagccatggccttg
attaaaatcccaggtgtcgactctgcaaaagaagctataagttcccttgaacaggttttg
gatagaaacaatgatcccaagcttatagctcttaaaggagaggcctgtctcaataaaggg
cttgttgatgaagctttgaagattgcacaggagcttaaacagacccacccagacttagca
gaagctgactaccttgaaggtttgattcattatcagcaaaagaactatcatcaggcagaa
gcaagtttccagagagctattgaaaaagaagctgaaatagctgacttccatttctgcctg
ggcctcacttactggtttatgagtgaagacacaagaaaaaataaatccaaagctcttact
cagtttctgaaggcagcaaaactggacaattacctgggaagtgctttccactacttaggt
caatactacagggatatagctggagataaaaacagagcacttggctgctataaaaaggct
tttgaaaaagataaaacggatggagaagctggagcagcggtagtggacttaagcaccgag
cttggagacttgcaaactgcccttgccatcttgacggaggtaacggaacgagcaagtgct
gggagagcaaaatgggcctggcttcgtcgtggacttcactacttaagagctggtcagcat
tcacaagcagtggcagatttgcaggcagctctgcgagcagatccaaaggatccccactgc
tgggaatctctaggagaggcctatctgagcagaggcggctacacaactgcattgaagtct
ttcaggaaggccagagaactgaaccccaagtctatatatagcatctataaggcagcagca
attgaacagattctaggaaaatataaagatgctattgcagaatatcagcacatcttgaca
aaatcaaaggactatgtccctgcgctgaaaggtctgggagagtgttatctcatggtggcg
aagactgcccttgctgattacctggatgggaaagccctggactacatagaacaatctctt
ggctttttagcaagagcagcaaagcatcgtcctgaagtatcctgcctttggaaactgctt
ggagatgcctgtagcagtgtttctgtcatttcgccatccaaagtgaacgtgaaagtttta
ggattccttattggtcagaacacagacaaatgtgtgctaaagaaaagtgacttgctcagt
ctgggaggaaggtgttatggtagaggattaaaactgatgtcttccccaaatacgtggtgt
gatcttgggataaactactatcatcaagcacagcatcttacggaaatgggcagtaacaag
aatgagattagtgagctgctagagaaatctgtacagtgtcttaaaaaatctgtgaggcta
gacagtaacaaccatctatactggaatgctctgggcgtggtggcctgttgcaaaggtgtt
ggaaactatgcccttgcacaacatgcattcatcaaatctattcaagctgaacaaattaat
gtcgttgcctggaccaatttgggagtcttgtacttaacaactggaaacatagagcaagca
catgaagccttcaaagtagctcaatccttagaaccctcctatctaacatgttggattggg
caggcgctcattgcagaaactgtaggcagctatgaaacgatggacctcttcaggcatacc
acagaactccgcatgcatactgaaggcgcaaaaggttatgcccactgggtgtgctcaacc
ttgcaagataaaaccaaccgaaacactgaattgtataagtacaatattcttcaaatgaat
gctattccaacagcacagattgctctgactaaatacacagaaagaatccaaaatgatgca
tgtgccttcataatgcttggttatttgaatgaatatcttcagctgaaaaagcaggccgta
gatgcctaccaaagggcagttctgctgttgaaaaattctgaagataaagagaaatactgc
atagcaatgagaaattatggcagagcactgtgtgctctaggtcattatgatgatgccatc
caggcttacttgttgactcgtctcacagaatttgatgatattttaggaattgcccaggct
tacttcaagaaaggacatttccaagaaagtcagaaggcttatgagagagcactctctgtt
gccgaatgtgagcaagacaaagcctatatcctaacagcccttgcaataatggagtacaag
caggatcaagtggatgatgcgaaaaccctcttatttaagtgttctatattacaggaacct
aatctaggaagtctgcaagctctgtgcgctttagggctgataaggcaggatgctacactt
gcaacggcagctctgaaagaattattaaagctaacagaaagaaaggatgatgtttatgag
aggtgccttcttacatcagctgtctatgcattacaaggcagaaatctggctgttcagaga
caagtttcaaaagctgttcacagcaacccagataatcctgccctgtggtctctcctgtcc
caactggtacctcggtatacaccacaaaatgcaaagggtggggctgctgcaggaaccatt
gctcatattcacgatttaaaccacggaaagagagccttgctgaacactgcagttaatcag
ttggcgttaggatgccacacagctgaaagtaaaaagaacaatccattgaagaatatccaa
aaggcagtccatctttctccagataaccctgcttcttgggctgtgctcctggctgcttgt
catgctgaaaacaccattgtttgcctgcataatacacaacccaagaggacagatttggaa
aaaacgattgtagctacaatctcagcgaaaatcaaagataaggatcttccaacttcttat
gcccaagcgcttgaagaatggtctcttttccaagctgttactagcttaaatgagacaggt
agaacttcggaagctgaagcgctctgtacaaagggattgaaaattttccctgagcagcca
actttatacttgcttttaaggcaagttcagtgcaaaccactttggcagtctcacaaagag
cttcctgatgcaatcttggaagagctccggaaggcagtgatgtccaactctacttcagtt
acagcttggcattggttggctcaagtgtaccagtcacaggggatgatggttgcagcagag
atgtgttaccgaaaaagtctgcaactggcatctcagcagggccactggagtggaaagctc
tctagtctactaaggcttgctaagcttgccctggaaatctgcatgggtaatatttcaaat
gatcactggccatctctggttcaggaagccacaacagaagctttgaagctttccttctgt
ccgttgggtgttctgttgcaggcgcttctgcagtacaaccgcaaaatggggtcaagggaa
actcgccgcatactagaaagagtggtgtatcaacctgggtatccagaaactgtcgcatca
gttgcccggtggtatctcttaaggcacttgtatgccaaagatgattatgaattaatagat
gctcttgtagcaaatgccaaagctaatggagatgttcgagctttggagctagacaagaaa
ctctcagcggcagcagcatcctag
DBGET
integrated database retrieval system
