Podarcis raffonei (Aeolian wall lizard): 128423469
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Entry
128423469 CDS
T09310
Symbol
YTHDC2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
praf03041
]
128423469 (YTHDC2)
Enzymes [BR:
praf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128423469 (YTHDC2)
Spliceosome [BR:
praf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
128423469 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
HA2_C
OB_NTP_bind
Helicase_C
R3H
DEAD
HA2_N
Ank_2
AAA_19
AAA_22
Ank
nSTAND3
ATPase
Ank_4
PhoH
AAA_23
AAA_16
AAA_7
T2SSE
SRP54
AAA_29
TrwB_AAD_bind
Motif
Other DBs
NCBI-GeneID:
128423469
NCBI-ProteinID:
XP_053264602
LinkDB
All DBs
Position
11:43337377..43373287
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AA seq
1455 aa
AA seq
DB search
MSRPSSVSPRPPGGGGGPPSGGPSTAAASSSCTGSGRSKGLKDIRIDEEVKIAVNIALER
FRYGDQREMEFPSSLTSTERAFIHRLSQSLGLISKSKGKGASRYLTVKKKDGSELAHTVM
TCNLIPNTKHAIRSLVQRFPVTNKERTELLPKTERGNVFAVEAENREMSKTSGRLNNGIP
QIPVKRGESEFDSFRQSLPVYEKQDEIVRIIKENKVILIVGETGSGKTTQIPQFLLDDCY
KNGIPCRIFCTQPRRLAAIAVAERVAAERREKIGQTIGYQIRLESRVSPKTLLTFCTNGV
LLRTLMAGDSALSTVTHVIVDEVHERDRFSDFLLTKLRDTLQKHSSLKLILSSAALDVNL
FLRYFAGCPVIYIPGRPFEVKEMFLEDLLRSTGYTNKEMIKYKKEKQREEKQQTTLTEWY
SAQDNSKPELQRQRAIPNVAEEYDLLDDGGDTVFSQLAEKDVNCLEPWLIKEMDACLSDI
WLHKDIDAFAQVFHLILTENVSVDYRHSETSATTLMVASGRGFLSQVEQLIGMGANIHIK
SSNGWTALDWAKHFGQTEVVDLLESYCASLESGNLDESSLVHANASELSAEDRELLKAYH
HSFDDEKVDLDLIMHLLYNICHSCDAGAVLIFLPGYDEIVGLRDRILFDDKRFADNAHRF
QVFMLHSNMQTSDQKKVLKTSPPGIRKIILSTNIAETSITVNDVVFVIDSGKMKEKSFDA
LNCVTMLKMVWISKASAVQRKGRAGRCRPGICFRLFSRLRFQNMLEFQTPELLRMPLQEL
CLHTKLLAPINCPIADFLMKAPEPPPALIIRNAVQMLKTIDAMDTWEDLTELGYHLADLP
VEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGTFSD
HMALLRAFQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGG
DIRDVNTNSENWAVVKGALVAGMYPNIVHVDRENIVLTGPKEKKVRFHPTSVLSQPQYKK
IPPANGQVAAIQALPTDWLIYDEMTRAHRIANIRCCSTVTPVTVALFCGSARLPSNALQE
PSSFRVDGVPNDSSDSEMEDRTTANLAALKLDEWLHFKLDPEAASLLLQLRQKWHSLFLR
RMRAPSKPWSQVDEATIRAIIAVLSTEEQSAGLQQPSGIGQRPRPMSSEELPLASSWRSN
TSRKSSAEAEFADDAFNAERNPPKATLSYDINKEQNNTILRVLMKSASPAFHQPLKYKER
SVLHSKRSTDDRSDQSSVKSTDSSSFPSPCASPSPPSSGKGSKSPSPRPNMPVRYFIMKS
SNLRNLEISQQKGIWSTTPSNERKLNRAFWESSVVYLVFSVQGSGHFQGFARMSSEIGRE
KSQDWGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLL
QLWDRIPLGEKNAAD
NT seq
4368 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgcccgagcagcgtctccccgcggcctcccggagggggcggcggccctcccagc
gggggcccgtccaccgccgccgcctcgtcctcctgcaccggcagcggccggtccaaaggg
ctgaaggacattcgcatcgacgaggaggtgaaaatcgccgtgaacatcgctctggagagg
ttccgctatggggaccagcgagaaatggaatttccttcctccttgactagtactgaaaga
gccttcatccatcgactgagtcaatcgcttggtctgatttctaaaagtaaagggaaaggt
gcaagcagatatctaactgtgaagaaaaaagatggctcagagttggcacatacagtaatg
acatgtaatttgattcccaacacaaaacatgctattagaagccttgtacagcgatttcct
gtcaccaataaagagcgcaccgagcttctgccaaagacagagagaggaaatgtttttgct
gttgaagctgagaatagagaaatgagcaaaacaagtgggcgacttaacaatggcatccct
caaatcccagtgaaacggggagaatctgaatttgattcgtttcggcagtctctaccagtt
tatgaaaagcaggatgaaattgttagaattattaaagaaaataaagttattttgattgtg
ggggaaactggatcaggaaaaactactcagattccccagtttctacttgatgactgctac
aaaaacggaataccatgtcgcatattttgcactcagccaagacgtttagcagcaattgct
gtggctgaaagggttgctgctgagagaagagagaagattgggcagacgattggctatcaa
atccgactggaaagcagggtctctccaaagacacttttaacattttgcactaatggtgta
ttacttcgtacattaatggcaggagatagtgcactgtcaactgtaactcatgtcattgtg
gatgaagtccatgagagagatcggttcagcgacttcttgttaacgaagttaagagataca
ctacaaaaacactcatcattgaaactcatactttctagtgctgccctggatgtgaacctc
tttctcagatattttgcaggctgtccagtgatatatataccaggaagaccatttgaagta
aaagagatgttccttgaagacctactaagaagcacaggctacacaaataaagagatgatc
aaatacaaaaaggaaaaacagcgagaggaaaaacaacagacaactctgactgaatggtat
tctgcacaagacaacagcaagccagaattgcagcgccagagagcaataccaaatgtggct
gaagaatatgatctgttggatgatggtggtgacacagtgttcagtcagctggctgaaaaa
gatgtcaactgtcttgaaccttggttaattaaagaaatggatgcttgtctctctgatatt
tggctacacaaagacattgatgcctttgcacaggtgttccaccttattttaactgaaaat
gtcagtgttgactacaggcacagcgagacaagcgcaacgactttaatggtagcttctgga
agaggtttcttgagtcaagtagaacagctgattggtatgggagcaaacattcacatcaaa
tcatctaatggctggacagctttagactgggctaagcacttcggacagacagaagtggtt
gatctgttggagtcctactgtgcctcactagagtcgggtaatctcgatgaaagttctttg
gtccatgcaaatgctagtgaactcagtgcagaagacagagaactcctaaaggcttatcat
cacagctttgatgatgaaaaagtggatcttgacctgatcatgcacctgctatacaacatc
tgtcacagctgtgatgcaggagcggttttaattttccttcctggatatgatgagattgtt
ggcttgagggaccgcatcctgtttgatgacaagaggtttgctgataatgctcacaggttc
caagtttttatgctgcattcaaatatgcagacatcggatcagaagaaggttctaaagacc
tctcccccaggcatccgcaaaataattctttctacaaatattgccgaaaccagcatcaca
gttaatgatgttgtctttgtgattgactctggaaaaatgaaggagaagtcctttgatgca
ttgaactgtgtgaccatgctgaagatggtatggatttctaaagctagtgccgttcagaga
aagggcagggcaggacgttgtcgacctggaatttgtttccgactttttagtagactcaga
tttcaaaatatgctggaatttcagaccccagaactactaagaatgccactacaggagctt
tgtttgcatacaaaattgctagctcccatcaactgtccaattgctgacttcttgatgaaa
gctccagaaccacctcctgctttaatcataagaaatgctgtacagatgcttaagacaata
gatgccatggatacctgggaggatctgacagaacttggctatcatctggctgacttacca
gtagaacctcatcttggcaaaatggtgctgtgtgccgttgttctgaagtgcctggatcct
attctgacaatagcatgtacccttgcataccgcgacccatttgtgttacctacacaggcc
tctcaaaagcgtgcagccatgctgtgtagaaaaagatttactgcaggaacatttagtgac
catatggctcttctccgggctttccaggcatggcaaaaggcgcgaagcgatggctgggaa
cgagctttttgtgagaagaatttcctttctcaggcaacaatggagattatcataggaatg
agaacacagctgcttgggcaactcagagcatcaggttttgtaagagccagaggtggtggc
gacataagagatgttaacacaaactctgagaactgggctgtggtgaaaggtgccttagta
gctggaatgtaccccaatatagttcacgttgacagagagaacattgttttgactgggcca
aaagaaaaaaaagttagatttcatcctacctccgttcttagccagccccagtataaaaag
attcctccagcgaatggtcaagtggcagctattcaggcacttcccacggactggctcata
tatgatgaaatgacaagagcccaccgcatagccaatatcaggtgctgctcaactgtgacg
ccagtcactgtggcgctcttctgtggatcagctaggctgccaagtaatgctttgcaggag
ccttcctccttcagagtggatggtgttcctaatgacagcagtgatagtgagatggaagac
agaactactgctaacttggctgccttgaaactggatgaatggcttcatttcaaattagac
ccagaggctgctagcctactcctgcaattgaggcaaaaatggcatagtttatttttacgg
cgcatgagagctccttcaaagccctggtctcaagttgatgaggcaaccatacgagcaatc
attgctgttttaagcactgaagaacagtctgcaggtctacagcagccttcgggaattggg
caaagaccaagacccatgtcatctgaagaacttcctctagcgtcttcatggagatcaaac
actagccgaaaaagctcagcagaagcagaattcgcagacgatgcttttaatgctgaaaga
aatccccccaaagcaactttaagctatgatataaacaaagaacagaacaatacaatatta
agagttctaatgaagtctgcatctccagcatttcaccaacccctgaaatacaaagagaga
agcgttttgcattccaaacgaagcacagatgataggtcagaccagtcgtctgtgaaatct
acagacagcagcagtttccccagcccctgtgccagtccttctcctccgtcatctgggaag
ggctccaagtctccttctccaagaccaaatatgccagttcgatacttcattatgaaaagc
agcaacctgagaaaccttgagatttcacagcagaaggggatttggtctacaaccccaagt
aatgagcgaaaactgaatcgagccttttgggagagcagtgttgtttacttagtattttct
gttcagggatcaggacactttcagggctttgctcgaatgtcttcagagattggacgtgag
aagagtcaggattggggttctgctggcttaggaggagtattcaaggtggagtggatccgg
aaagaaagtcttccttttcagtttgctcatcacttactcaacccttggaacgacaacaag
aaagtacaaataagtcgagatggccaggaactggaacctcaggttggtgaacagttgctg
cagctctgggaccgtattcctttaggagagaaaaatgcggctgattga
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