Podarcis raffonei (Aeolian wall lizard): 128423751
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Entry
128423751 CDS
T09310
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128423751 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
praf03019
]
128423751 (MTREX)
03041 Spliceosome [BR:
praf03041
]
128423751 (MTREX)
03009 Ribosome biogenesis [BR:
praf03009
]
128423751 (MTREX)
03016 Transfer RNA biogenesis [BR:
praf03016
]
128423751 (MTREX)
Enzymes [BR:
praf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128423751 (MTREX)
Messenger RNA biogenesis [BR:
praf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
128423751 (MTREX)
Spliceosome [BR:
praf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
128423751 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
128423751 (MTREX)
Ribosome biogenesis [BR:
praf03009
]
Eukaryotic type
Pre-60S particles
Helicases
128423751 (MTREX)
Transfer RNA biogenesis [BR:
praf03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
128423751 (MTREX)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
128423751
NCBI-ProteinID:
XP_053265240
LinkDB
All DBs
Position
11:22755974..22801718
Genome browser
AA seq
1038 aa
AA seq
DB search
MADAFGDELFSVFEEDPAAASGSKKAKGAAEATAAAIGKAGKQSEGKSAASSKFPTKTKR
DAEIDSTDIPVFEKKPKLEDTATEDLSLADLMPKIKVQAVETVEGCTHEVALPADEDFIA
LKPRTGKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR
VIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMR
EVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPC
HVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGR
KGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKRMVEEVF
NNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATET
FAMGINMPARTVLFTSARKFDGKDFRWITSGEYIQMSGRAGRRGMDDRGIVILMVDEKMS
PTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEK
VSKLEQQYNEIEIPNEENVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKVKN
EGDDFGWGVVVNFSKKSNVKPNSGELDPLYVAEVLLHCSKESLKNSATEAAKPAKPDEKG
EMQVVPVLVHLLSAISSVRLYIPKDLRPLDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMG
IKDPGLKKVIQKIEAFEHRMYSHPLHNDSNLETVYKLCERKAQIAVDIKAAKRELKKART
VLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQ
ATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEENYLNSFRP
NLMDVVHTWANGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFA
EGITKIKRDIVFAASLYL
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcctttggggacgagctgttcagcgtgttcgaagaagaccctgccgccgct
tccggctcgaagaaggcgaagggggcagctgaggcgactgccgctgccataggcaaggcc
gggaaacaatcagaaggcaaatctgcagcatcctctaaatttccaacaaaaactaaacga
gatgcagagatcgatagcacagacattccagtttttgaaaagaagccaaagttggaagat
accgccacagaagatctcagtttggcagacctgatgccaaaaataaaggtacaagcagtt
gaaactgttgaaggttgtacacatgaggttgctcttcctgcagatgaagattttatagct
ctgaagccaagaactggaaaagctgcaaaggaatatccattcattctcgatgcttttcaa
agagaagctattctgtgtgtggataacaatcagtcggtgctggtgtctgctcatacatca
gcagggaaaactgtgtgtgcagagtatgccatcgctttggctttaagggaaaaacagcgt
gtgatatttactagtcccatcaaagctctcagtaaccaaaaatatcgtgagatgtatgaa
gaatttcaagatgttggtctgatgacaggggatgtcaccatcaatccaacagcatcttgt
cttgtaatgacaacggagattttgagaagtatgctttacagaggttctgaggtcatgcgt
gaagttgcttgggttatatttgatgaaattcattacatgagggattcagagcgtggtgta
gtatgggaggaaaccatcattttactcccagacaacgttcactatgtgttcctttctgcc
actattccaaatgcacgccagtttgctgaatggatatgccatcttcacaaacagccttgt
catgtgatttacacagattatcgacccactccgctgcaacattatatcttcccagcaggg
ggagatggactccatcttgtagttgatgaaaatggtgattttagagaagataattttaac
acggccatgcaagtccttcgagatgcaggtgacttagctaaaggggaccaaaaaggcaga
aaaggaggaacaaaaggtccatcaaatgtttttaagattgtaaagatgataatggaaaga
aactttcaaccagtaattatattcagtttcagtaagaaagattgtgaagcgtatgctctt
caaatgacaaaactggacttcaatacagatgaagaaaaaaggatggttgaagaagtgttt
aataatgcaattgactgtttgtctgatgaagacaaaaaacttcctcaagttgagcatgtt
cttccacttttgaagcgaggcattggaatccaccatggggggttgcttcctattctaaag
gaaaccatagaaatacttttctctgaaggattgatcaaggccttatttgcaactgagact
tttgctatgggaataaacatgccggcaagaacagtgctgttcacaagtgcccgaaagttt
gatgggaaggatttccgatggatcacctcaggtgaatatattcagatgtctggtcgtgcc
ggacgtcgaggcatggatgataggggaatagttattctgatggtggatgaaaagatgagc
ccaacaattggaaaacaacttcttaagggatctgctgaccctctaaacagtgctttccat
ttgacatacaacatggtattaaatttgctgcgtgtggaagaaattaacccggaatacatg
ttagagaaatcattttaccaattccaacattacagagctattccaggagtagttgaaaag
gtcagtaagttggaacagcagtacaatgagattgaaattccaaatgaggaaaatgtggtc
atttactataaaatcagacaacagctggctaaactgggtaaagaaatagaagagtacatt
cacaagccaaagtactgcttgccctttttacagccagggaggctggtaaaagtgaaaaat
gaaggtgatgactttggctggggcgtggtggtgaacttctccaagaaatcaaatgtgaag
cctaactccggtgagttggacccactctatgttgctgaagtcctcctgcactgcagcaaa
gaaagcttaaaaaattctgcaactgaagctgcaaaaccagcaaaacccgatgaaaaaggg
gagatgcaggttgttcctgttttggtgcatcttctgtcagcaatcagcagtgttcgccta
tatatacccaaagacctgaggcctcttgataacaggcagagcgtactgaagtcaatacag
gaggtgcagaaacggttccctgacggtgttcctttgctggatcctattgatgacatgggc
attaaagatccaggtctgaagaaagtaatccaaaaaatagaagcctttgagcacaggatg
tattctcaccctcttcacaatgattctaatttggaaactgtgtacaaactttgtgagaga
aaagcacagatcgctgtagacattaaagcagcaaaacgagaactgaagaaagccaggact
gttttacaaatggatgagctcaagtgtcgtaaacgtgttttgagaaggttgggttttgca
acctcctcggacgtcatagagatgaaaggccgggtcgcttgtgaaatcagcagtgccgat
gagctgttgctgacggaaatgatgttcaatggacttttcaatgacttatctgcagaacaa
gcaactgctttactaagctgctttgtatttcaagaaaattctagtgaaatgcccaaacta
acagaacagttggcaggcccccttcgccaaatgcaggaatgtgcaaaaagaatcgctaaa
gtgtcggcagaagctaaattggaaatcgacgaggaaaactacctgaattcgtttaggccg
aacttgatggatgtcgtgcacacatgggccaatggagcaacgtttgctcacatatgcaaa
atgacagatgtctttgaagggagcataatacgctgtatgaggcggctagaagaattgctt
cgacagatgtgtcaagcagcaaaggccattggaaacacagaactggaaaacaaatttgca
gaaggcattaccaaaatcaagagagatattgtatttgctgcaagtctttacctataa
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