Podarcis raffonei (Aeolian wall lizard): 128424102
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Entry
128424102 CDS
T09310
Symbol
COL1A2
Name
(RefSeq) collagen alpha-2(I) chain isoform X1
KO
K06236
collagen type I alpha
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf04510
Focal adhesion
praf04512
ECM-receptor interaction
praf04518
Integrin signaling
praf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128424102 (COL1A2)
04518 Integrin signaling
128424102 (COL1A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128424102 (COL1A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
128424102 (COL1A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
praf00536
]
128424102 (COL1A2)
Glycosaminoglycan binding proteins [BR:
praf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128424102 (COL1A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
128424102
NCBI-ProteinID:
XP_053265906
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All DBs
Position
12:27923943..27988815
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AA seq
1235 aa
AA seq
DB search
MSKAADPGPGPMGIMGPRGPPGVTGPPGSPGHAGHAGEPGEPGQTGPQGARGPMGPPGKP
GEDGHPGKPGRPGERGVPGPQGTRGFPGTAGLPGFKGLRGHNGLDGRKGEPGAPGNKGEP
GAPGENGTPGQPGARGLPGERGRVGAPGAVGARGSDGSNGPTGPAGPMGAAGAPGFSGAP
GAKGEVGSAGNTGPSGPAGPRGEVGLPGASGPVGPPGNPGNNGINGAKGAAGLPGPAGAP
GLPGPRGMIGAAGSAGAAGARGLVGEPGPAGSKGETGNKGEPGASGPAGPAGPSGEEGKR
GSNGEPGSTGAPGSAGLRGVPGSRGLPGADGRAGVMGAVGNRGATGAAGAKGPNGDSGRP
GEPGLMGARGLPGQSGSPGPAGKEGLPGLAGADGRPGPIGPAGPRGEPGIIGFPGPKGPN
GEPGKPGDRGHVGVAGQRGAPGPEGNNGAQGPIGVVGNPGAKGETGPAGAPGFQGLPGPS
GPVGEAGKPGERGLHGDFGPAGPAGPRGERGLPGQSGAVGPVGSIGSRGPSGPPGTDGNK
GEPGAAGAAGTPGPAGPSGMPGERGIAGVPGGKGEKGPTGFRGEAGTSGRDGSRGIPGAV
GAPGPAGSTGERGQRGPKGEQGPQGAVGSVGNSGPSGPVGPAGPTGGRGDSGPPGVTGFP
GAAGRSGPPGPAGITGPPGPPGPAGKEGIRGQRGDTGPVGRAGEPGIVGPPGFSGEKGPS
GESGAAGAPGSPGPQGLLGAPGILGIPGSRGERGLPGIAGSLGEPGPLGIAGPPGARGPS
GPVGSPGVNGAQGEAGRDGNPGNDGPPGRDGTPGYKGERGAPGNPGPAGALGAPGPHGSV
GPAGKPGNRGEPGPVGIAGPAGPAGARGLAGPAGPRGEKGGPGDKGPRGAPGFKGHNGLQ
GLPGIAGHHGDQGSPGATGPAGPRGPAGPSGPPGKDGRNGLPGPVGPAGVRGSQGSQGPS
GPPGPPGHPGPPGPNGGGYEIGYDAEYYRADQPSLRPKDYEVDATLKTLNNQIETLLTPE
GSRKNPARTCRDLRLSHPEWTSGFYWIDPNQGCTMDAIRVYCDFSTGETCIHANPESFPA
KNWYSSKNPAEKKHIWFGEMMNGGTQFEYNEEGVTTKDMATQLAFMRLLANHASQNITYH
CKNSIAYMDAETGSLKSALLVQGSNDVELRAEGNGRFMYNVLEDGCSRKTNKWGSTIIEY
RTNKPSRLPILDIAPLDIGGPDQEFSIDIGPVCFK
NT seq
3708 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaagcagctgatcctggccccggacctatgggcataatgggacccagaggccct
cctggagtaactggaccccctggctctccaggccacgcgggacatgctggtgaacctggt
gaacctggtcaaacaggtccccaaggtgctcgtggtccaatgggtcctcctgggaagcct
ggtgaagatggtcatcctggaaaacctggacgacctggtgagaggggtgttcctggacct
cagggtactcgtggctttcctggaactgctggcctgcctggtttcaaaggactaagggga
cacaacggtttggatggtcggaaaggagaacctggtgctcccggcaacaagggcgaacct
ggtgcccctggtgaaaatggtactcccggacaacctggtgctcgtggtctccctggtgaa
aggggaagagtcggcgctcctggcgcagttggggctcgtggcagtgatggaagtaacggt
cccactggtcccgctggtcccatgggtgctgctggagctccaggattctcaggtgctccc
ggagccaagggtgaagttggttctgctggcaacacgggtccctctggtcctgctggccct
cgtggtgaagttggactccctggtgcttccggtcctgttggccctccaggtaaccctggt
aacaacggcattaatggtgctaaaggcgcagctggtcttcccggtccagctggggctcct
ggcctgcctggtccccgtggtatgattggcgctgctggctccgctggtgctgctggagct
agaggacttgttggcgaacctggccccgctggatccaagggagagaccggtaacaaggga
gagcctggcgcttccggccctgctggccctgctggaccaagtggtgaggaaggcaagagg
ggctccaacggcgagcctggctcgactggggcacctggatctgcaggtttaagaggtgtt
cctggatctcgtggtctccctggagctgatggcagagctggtgtgatgggagctgttggt
aatcgtggtgctactggtgctgctggtgctaagggtcccaatggtgattctggacgcccc
ggtgaacctggtctcatgggtgcaagaggtctccctggtcaatctggaagcccaggccct
gctggcaaagaaggtcttcctggtctggctggtgctgatggtagacctggcccaattggt
cccgctggtccaagaggtgaacctggcatcatcggattcccaggacctaaaggtcccaat
ggtgagcctggcaaacctggtgacagaggccatgttggtgttgctggccaacggggtgct
cctggtcctgagggaaataacggtgctcaaggtccaattggtgttgttggcaaccctggt
gctaaaggtgaaactggcccagctggtgctcctggcttccaaggtcttccaggtccctca
ggcccagttggtgaagctggcaaaccaggcgaaaggggtcttcatggtgatttcggtcct
gctggtcctgctggtccaagaggtgagcgtggtcttccaggtcaaagtggtgctgtaggt
cctgtaggctccattggaagccgtggcccatccggcccaccaggaactgatggtaacaag
ggtgaacctggtgccgctggtgctgctggtactccaggcccagctggtcccagtggaatg
cccggcgagagaggtattgctggcgtcccaggaggcaaaggcgaaaagggtccaacaggc
ttcagaggagaagccggaacttcaggaagagatggttcacggggtattcctggtgcagtt
ggtgctcctggccctgctggaagtactggtgaaagaggccagagaggacctaaaggagaa
caaggcccacaaggtgctgtcgggtctgttggcaactctggcccctctggtcccgttggc
cctgctggtcccactggaggtcgtggtgattctggtccacctggtgtcactggtttccct
ggtgctgctggaagatccggaccccctggccccgctggtatcactggtccccctggccct
cctggcccagctggcaaagaaggtatccgaggccaacgtggtgacactggtccagttggc
cgtgctggtgaacctggtattgttggcccacctggattcagtggagagaaaggtccaagt
ggagaaagtggtgctgctggtgcccctggttcccctggtcctcaaggtcttcttggagct
cctggtatccttggtattcctggcagcagaggagaacgtggtctcccaggcattgctgga
tcacttggtgagcctggaccccttggtattgctggtcccccaggtgcccgcggcccatct
ggtcccgtgggttcccctggtgtgaatggtgcccagggcgaagctggacgtgatggaaat
ccaggtaacgatggtcctccaggccgtgatggtactcctggttacaagggtgaacgtggt
gctcctggcaaccctggtcccgctggtgctctcggtgcccccggcccccatggctctgtt
ggccctgctggcaaacctggaaatcgtggcgaacctggtcccgttggaattgctggtcct
gctggtcctgctggtgcaagaggtcttgctggcccagcaggtccacgtggtgagaaaggt
ggtcctggtgacaagggacccagaggcgcacctggcttcaagggacacaatggacttcag
ggtctgcctggcattgctggtcatcatggagaccaaggttcacctggtgctactggacct
gctggcccaaggggccctgcaggtccttctggtcctcctggcaaagatggccgcaacggt
cttcctggacctgttggccctgctggtgtgcgtggctctcagggtagccaaggaccttct
ggtccaccaggcccacctggccaccctggcccacctggtcccaatggtggtggatacgaa
attggctatgatgcagaatactaccgggcagatcagccatctctgagacccaaggactat
gaagttgatgccaccctgaaaacattgaacaaccaaatcgagaccctcctgaccccagaa
ggctccaggaagaacccagcccgcacctgccgtgacctcagactcagccacccagaatgg
accagtggcttctactggatcgatcctaaccaaggctgcaccatggatgccattagagtt
tattgtgacttctccactggtgagacttgcatccatgccaatccagaaagcttcccagct
aagaactggtacagcagcaagaaccctgccgaaaagaaacacatttggtttggagaaatg
atgaatggcggtactcagtttgagtacaacgaggaaggtgtaaccaccaaggacatggcc
acccaacttgccttcatgcgactactggctaaccatgcttcccagaacatcacttaccac
tgcaagaacagcatcgcttacatggatgcagaaacaggcagcctgaagagcgctctgtta
gtgcagggatccaacgatgtcgaactccgagctgaaggcaacggcaggttcatgtacaat
gttcttgaagacggctgctctagaaagacaaacaaatggggctcaacaattattgaatac
agaacaaacaagccatctcgcttgcccatccttgacattgcacctttggacattggtggc
cctgatcaagaattcagtatcgacattggcccagtctgtttcaaatga
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