Limnobaculum zhutongyuii: EKN56_00020
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Entry
EKN56_00020 CDS
T06157
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
prag
Limnobaculum zhutongyuii
Brite
KEGG Orthology (KO) [BR:
prag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
prag03032
]
EKN56_00020 (gyrB)
03400 DNA repair and recombination proteins [BR:
prag03400
]
EKN56_00020 (gyrB)
Enzymes [BR:
prag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
EKN56_00020 (gyrB)
DNA replication proteins [BR:
prag03032
]
Prokaryotic type
DNA Topoisomerases
EKN56_00020 (gyrB)
DNA repair and recombination proteins [BR:
prag03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
EKN56_00020 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
GyrB_hook
HATPase_c
HATPase_c_3
DUF6865
Motif
Other DBs
NCBI-ProteinID:
QBH94936
UniProt:
A0A411WFV9
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All DBs
Position
3761..6181
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AA seq
806 aa
AA seq
DB search
MSNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIV
VTIHSDNSVSVQDDGRGIPTGIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV
SVVNALSDKLELVIDRDGKTHKQIYRSGVPEAPLKVVGDADRSGTRIRFWPSPDTFTTNL
EFQYDILAKRLRELSFLNSGVSIKLNDERDDKHDHFHYEGGIKAFVEYLNRNKTPIHPSV
FYFTHQNEKDGINVEVSLQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNNYME
KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESIMAEKLS
EYLLENPGDAKIVVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQERDPALS
ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI
GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEVIERGYIYIAQPPLYKVK
KGKQEQYIKDDEAMDQYQITTALDGASLFVNPQAPALAGEPLERLVAEFYSVQKMLKRME
RRTPLALLNQLVYQSTLTEEILSDKAKTQEWVESLVNTLNEKEQHGSTYIALVQENSERA
IFEPQIRVRTHGVDTDYNLNIDFVLGSEYRKMCHLGEQLRGLIEDDAFIERGERRQPVAT
FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPEGRRMLQVTIKDAIAADQLFT
TLMGDEVEPRRAFIEQNALKVANLDV
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatacatatgattcctcaagtatcaaggttttaaaaggtctggatgcggtacgt
aaacgcccgggcatgtatatcggtgataccgacgatggtaccggtctgcaccacatggta
tttgaggttgtcgataacgcaatcgacgaagcgctggctggctactgtaaagacatcgtt
gtaaccattcacagtgataactccgtttccgtacaggatgatggccgtggtattcctacc
ggtattcacgaagaggaaggcgtttctgctgcggaagttattatgaccgtactgcacgct
ggcggtaagtttgatgataactcgtataaagtatccggcggtttgcacggcgtgggtgtt
tcagtagtcaatgcgctgtcggacaaactggaactggttatcgatcgcgatggcaaaacg
cataagcaaatctatcgcagcggggtgcctgaagcgcctctgaaagtggtgggtgatgct
gacagaagcggaacgcgtattcgtttctggccaagcccggacaccttcaccactaacctt
gagtttcagtatgacattctggctaaacgcctgcgtgagttgtcattcctgaactccggt
gtatccatcaaattgaatgatgagcgcgatgataagcatgaccacttccactatgaaggt
ggtattaaagcgttcgtagaatatctgaaccgtaataaaacgccgattcatccttctgta
ttctatttcacgcatcaaaatgaaaaagacggtatcaatgtagaagtctctctacagtgg
aatgatggtttccaggaaaatatctactgctttaccaacaatattccacagcgtgacggt
ggtactcacctggccggtttccgcgccgcaatgacccgtacgctgaacaactatatggaa
aaagagggctacagcaaaaaagccaaagtcagcgccaccggcgatgatgctcgtgaaggc
ttgatcgctgtggtttcggtaaaagtaccggatcctaaattctcttcacagactaaagat
aagctggtttcttcagaggttaaatctgccgttgaatccatcatggcggaaaaactgtct
gaatacctgctggaaaacccaggtgatgccaaaatcgtagtaggcaaaatcatcgatgca
gctcgggctcgtgaagcagcacgtaaagcgcgtgaaatgactcgtcgtaaaggggcatta
gatttaggtggcctgccgggtaagctggcggactgtcaggaacgcgacccggcattgtct
gaactctacttagtggaaggggactcagcgggcggctctgctaaacaggggcgtaaccgt
aagaatcaggcaattctgccgttgaaaggaaaaatcctcaacgtagagaaggctcgtttc
gacaagatgctctcttctcaggaagtcgcgaccctgatcactgcattaggttgtggtatc
ggccgtgacgaatacaacccggataagttgcgttatcacagtatcattatcatgactgat
gctgacgtggatggttcacacatccgtactctgttactgactttcttctatcgtcaaatg
ccggaagtgattgagcgcggttatatctatattgctcaaccaccgctgtataaagtgaag
aaaggcaaacaagagcagtacatcaaagatgatgaagcgatggatcagtaccagatcact
actgcattagatggtgcttcactgtttgtgaatccacaggcacctgcactggcgggtgaa
cctctggagcgtttggtggcagaattttacagcgtccagaagatgcttaaacgtatggag
cgtcgtactccgctggctctgcttaatcagttagtctatcagtcaacgctgacggaagaa
attctgtctgataaagctaaaactcaggagtgggttgaatcactggttaatactctcaat
gagaaagagcagcatggcagtacttatattgctctggttcaggaaaacagcgaacgcgct
atttttgaaccgcagattcgtgtgcgtactcatggtgtagatactgattacaacctgaat
attgattttgtattgggtagtgaataccgcaagatgtgtcacttgggtgagcaattgcgt
ggtctgattgaagatgatgcgtttattgaacgtggtgagcgccgtcagccggtagcaact
ttcgaacaggcacttgactggttagttaaggagtcacgccgtgggttatctattcagcgc
tataaaggtctgggagagatgaacccggaacaattgtgggaaaccacaatggatcctgaa
gggcgtcgtatgctacaggtaacgattaaagatgcgattgccgctgaccagctgtttact
acgctgatgggggatgaagttgaacctcgtcgtgcctttatcgaacagaatgcgctgaag
gttgctaacctggacgtgtag
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