Limnobaculum zhutongyuii: EKN56_02175
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Entry
EKN56_02175 CDS
T06157
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
prag
Limnobaculum zhutongyuii
Pathway
prag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EKN56_02175 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prag03019
]
EKN56_02175 (pnp)
03016 Transfer RNA biogenesis [BR:
prag03016
]
EKN56_02175 (pnp)
Enzymes [BR:
prag01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
EKN56_02175 (pnp)
Messenger RNA biogenesis [BR:
prag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
EKN56_02175 (pnp)
Transfer RNA biogenesis [BR:
prag03016
]
Prokaryotic type
tRNA degradation factors
EKN56_02175 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH_2
aRib
SLS1_KH2
S1_2
Spt6_S1
Motif
Other DBs
NCBI-ProteinID:
QBH98638
UniProt:
A0A411WR06
LinkDB
All DBs
Position
581038..583158
Genome browser
AA seq
706 aa
AA seq
DB search
MLNPIVRKFKYGQHTVTLETGMMARQATAAVMVNVDDTAVFVTVVGAKKAKEGQSFFPLT
VNYQERTYAAGRIPGGFFRREGRPSEGETLIARLIDRPIRPLFPEGFLNEVQVIATVVSV
NPQVSPDIVAMIGTSAALVLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVA
GTQSAVLMVESEAELLSEEQMLGAVMFGHEQQQVVIDNINALAAEAGKAKWEWQAPETNQ
ALYAQVEALASARLGDAYRITDKQERYAQIDVIKADVVAALLEQDADLNQSEIGDMLGSI
EKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVVATLGTAR
DAQNIDELTGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDQTE
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKDDESFVVLSD
ILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITREIMKVALNQAKGARLHILGVMEQA
ISAPRGDISEFAPRIHTIKINPEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTVKIAAV
DGDKAKHAIRRIEEITADVEVNRIYAGKVTRIVDFGAFVSIVGGKEGLVHISQIADKRVE
KVSDYLQMGQEVQVKVMEVDRQGRIRLSIKEATAPSQDAPAASEEQ
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
ttgctaaatccgattgttcgtaaatttaagtatggtcaacataccgtgacgttagaaacc
ggtatgatggctcgtcaggcaacggctgctgtgatggtaaacgttgatgacactgcagta
tttgttaccgttgtgggtgcgaaaaaagcaaaagaaggtcaatctttcttcccattaacc
gttaactatcaagagcgtacttacgctgctggtcgtatcccaggtggttttttccgtcgt
gaaggtcgtcctagcgaaggtgaaacactgatcgctcgtctgattgaccgtccgattcgt
cctctgttcccggaaggtttcctgaatgaagtccaggttatcgcaaccgtagtttctgtt
aacccacaagtaagcccggatatcgtggcaatgattggtacttctgcagcattagtgctg
tcgggtattccattcaacggtccaattggtgctgcacgtgttggttttattaacgatcaa
tatgttctgaacccaaccaccgatgagctgaaagagagccgtctggatctggtcgttgca
ggtacccaaagcgcagtattgatggttgaatccgaagctgaattactgagcgaagaacaa
atgctgggtgcggtaatgtttggtcatgagcaacaacaagttgtgattgataacattaat
gcgctggcagcagaagcaggtaaagctaagtgggaatggcaagcacctgaaactaatcag
gcgctgtatgctcaggttgaagctttagcttctgctcgcttaggtgatgcttaccgtatt
actgataaacaagagcgttatgctcaaatcgacgtgattaaagctgatgtggttgcagcc
ctgttagagcaggatgcagacttaaaccaaagcgaaatcggcgatatgctgggcagcatt
gagaaaaacgtagttcgtagtcgcgtactgcgcggtgagccacgtatcgatggccgtgaa
aaagatatgattcgtggtctggatgtacgcacaggcgtattaccacgtactcatggttca
gcactgttcacccgtggtgaaactcaggctctggttgtcgcaacgctgggtactgcccgt
gatgctcaaaacattgacgagttgaccggtgagcgtacggacagcttcctgttccattat
aacttccctccgtactctgtaggcgaaaccggcatggttggttcacctaagcgtcgtgag
attggtcatggtcgtctggcgaagcgcggtgtattagcggtgatgcctgaccagactgaa
ttcccatataccgttcgtgtagtgtcagaaattactgaatctaacggttcatcttctatg
gcttctgtttgtggtgcttcattagcactgatggatgctggcgtgccaattaaggctgct
gttgcgggtatcgcaatgggtctggtgaaagatgatgaaagctttgttgttctgtcagat
attctgggtgacgaagaccacctgggcgatatggactttaaagtagcaggtagccgcgaa
ggtatctctgcactgcagatggatattaaaattgaaggtattacccgtgagatcatgaaa
gtggctctgaatcaggctaaaggtgctcgtttgcacattcttggcgtgatggaacaggct
atttctgcaccacgtggtgatatttctgagttcgctccacgtatccacaccatcaagatt
aatcctgagaaaatcaaggatgtgatcggtaaaggtggtgcggtaattcgtgctctgact
gaagaaaccggtacaactatcgaaatcgaagatgacggtacagtgaagatcgcagcagtt
gacggtgataaagcgaaacacgctattcgccgcattgaagagatcaccgctgatgttgaa
gttaaccgcatttatgccggtaaagtgacccgtatcgttgactttggtgctttcgtatcc
atcgttggtggtaaagaaggtctggttcatatttctcaaatcgcggataagcgcgtagag
aaagtatcagactacctgcaaatgggtcaggaagttcaggtgaaagtgatggaagttgat
cgtcaaggccgtattcgcttaagcattaaagaagcgactgcgccgagtcaagacgctcca
gcagcatctgaagagcaataa
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