Limnobaculum zhutongyuii: EKN56_03270
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Entry
EKN56_03270 CDS
T06157
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
prag
Limnobaculum zhutongyuii
Pathway
prag03410
Base excision repair
prag03430
Mismatch repair
prag03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
prag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
EKN56_03270 (recJ)
03430 Mismatch repair
EKN56_03270 (recJ)
03440 Homologous recombination
EKN56_03270 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prag03400
]
EKN56_03270 (recJ)
DNA repair and recombination proteins [BR:
prag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
EKN56_03270 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
EKN56_03270 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EKN56_03270 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QBH95511
UniProt:
A0A411WGT8
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All DBs
Position
815670..817400
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AA seq
576 aa
AA seq
DB search
MNKTQLRRRPQVDSSTLPSTIPALLRHLYASRGVTDASQLDKGARSLLSYQQLDGIQQGV
DLLLAALKDKRQIVIVGDFDADGATSTALSILALRSMGFPRVNYLVPNRFEDGYGLSPEV
VEQAVELGAELIVTVDNGISSHAGVDSAHAKGIQVLVTDHHLPGETLPAAEAIINPNLDN
CEFPSKSLAGVGVAFYLMLALRARLREEKWFEQQGIAEPNLAELLDLVALGTVADVVPLD
ANNRILVHQGLNRIRAGQCRPGIKALLEVSKRDARQLTANDMGFSLGPRLNAAGRLDNMS
IGVELLLSNDMAEARGMASDLDTLNQTRREIEQGMQVEALTLCQQLEQNEAELPYGVAMY
HPEWHQGVVGILASRIKERFYRPVIAFAPAGDGILKGSGRSIAGLHLRDALERLDTLYPG
LMLRFGGHAMAAGLSLEESRFSEFQQRFADLIGEWLDPSALEGVIWTDGELENALLTLDT
AELLRDGGPWGQSFPEPVFDGQFKILQQRLVGERHLKVTVEPVGGGVLLDGIAFNIDTTQ
WPDASIKQATIAYKLDINEYRGNRNVQLMIQHLWAN
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaacacaattacgtcgtcgtcctcaggttgacagcagcactctgccatcgaca
attccagcgctattgcgtcatttatatgcctctcgtggggtaacggatgccagccagctg
gataaaggtgccagaagtttactgagctatcagcagctggacggaatacagcaaggggta
gatttgctgttggcggcgctgaaggataaacgtcagattgtcatcgtgggtgattttgat
gcggatggagcaaccagcacggcgttaagcattctggcgctgcgcagtatgggttttccc
cgagtcaattatctggtgcctaaccggtttgaagatggctacggcctgagcccggaagtg
gttgaacaggccgtggagctgggggcggaactgatcgtcaccgtggataacggtatctct
tcccatgccggagttgacagtgcccatgccaaaggcattcaggtgttggtcaccgatcac
catctgccgggagaaacgctacccgccgcagaagccattattaatccaaatttggataac
tgtgagtttccttccaaatcactggcgggtgtgggtgtcgctttttatttgatgctggct
ctacgggcgcgtctgcgtgaagaaaaatggtttgaacaacagggcatcgccgagcctaat
ctggcagaactgctggatttagtcgcgctgggcaccgtggcggatgtggttccgctggat
gccaataaccgaattctggtgcatcaggggcttaaccgtattcgcgccgggcagtgtcga
ccgggaattaaggcattgctggaagtttccaagcgagatgcgcgccaactgaccgctaac
gatatgggcttctcattggggccacggctgaatgcggcagggcgtctggataatatgtcc
attggcgttgagttactgctgagcaacgatatggccgaagcgcgcgggatggcgagcgat
ctggatacgttaaaccaaacgcgtcgcgagattgaacagggaatgcaggttgaggcgtta
accctgtgccagcagcttgaacaaaatgaagcagaacttccttatggtgtggcaatgtac
catcctgaatggcatcagggggtggtaggtattctggcatcaagaataaaagagcggttc
tatcgcccggtgattgcgtttgctccggcgggtgatggcattctcaaaggctccgggcgt
tcaattgccgggctacatctgcgggatgctcttgaacgattagacaccctctatcccggc
ttaatgctgcgatttggtggtcatgccatggcagcgggattatcacttgaagagtcccgc
ttcagcgagtttcagcagcgttttgccgatttgattggcgaatggttggatccatcggct
ctggaaggggttatctggaccgatggcgaactggagaatgcgttattgacgctggatacg
gcggaactattacgcgacggcggcccctgggggcaatcatttccggaaccggtatttgat
ggtcagtttaaaatattacagcagcgtctggttggtgaacgccatttaaaagttactgtt
gaaccggtaggcggcggtgtactattagatggcattgcattcaatattgatacgactcag
tggccggatgccagtattaaacaagcgaccattgcctataaactggatattaatgaatat
cgtggtaatcgtaatgttcaattaatgattcagcacttatgggctaattaa
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