Limnobaculum zhutongyuii: EKN56_03875
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Entry
EKN56_03875 CDS
T06157
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
prag
Limnobaculum zhutongyuii
Pathway
prag03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
prag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
EKN56_03875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prag03400
]
EKN56_03875
Enzymes [BR:
prag01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
EKN56_03875
DNA repair and recombination proteins [BR:
prag03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
EKN56_03875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_11
Motif
Other DBs
NCBI-ProteinID:
QBH95613
UniProt:
A0A411WHB5
LinkDB
All DBs
Position
956127..959663
Genome browser
AA seq
1178 aa
AA seq
DB search
MTVAQPLRLDPLTLPLFGERLIEASAGTGKTYTLAVLYLRLLLGLGQQAAYPRKLSVEEI
LVVTFTEAATEELRNRIRDNIHRLRIACIRNDSSDPLLLQLLTELADKEEASDLLLAAER
QMDEAAIYTIHSFCQRMLSHNAFESGVLFEQSLIEDELPLRRQAVADFWRRHCYPLPLPV
AQAISTEWGGPERLLADVMPYLHGEAPQLLQPSSLDDILLRHQQIIERIESLKQQWRASF
SGLESLISQSGVDKRSYSTKHLPNWLQKVNMWAEQETQDYTLPKELNNFRQSVLYEKTKK
GEAPVDPLFTAVDLIYSEPLTLRDLILSKAISEVRLSVQQEKRRRAEMGFDDLLSRLDSA
LQRSGAEALAQAIRQRYPVAMIDEFQDTDPQQYRIFHKLYGGREDTGLLLIGDPKQAIYA
FRGADIFTYMQARNEVSNHYTMETNWRSSSSMVSSVNQLFQQLPAPFIFQQIPFLPVKAA
EKNQYLSFELDGDNQPAVSLWLQPGEGCGLNEYQQFMARCCAVQIREWLTAGQQQRAWLV
SGTRRQPVVAADIAILVRTGKEASLVRDALSALGIPSVYLSNRESVFTTPEAKDVLWLLQ
AVLAPEKERTLRSALASSLLGLDARQIDDINRDEREWDRLVEEFSGYRQLWLKRGVLPML
REVMSRRQLAENLLVTLGGERRLTDIMHIGELLQEASLKLESEHSLVRWLAQQITQPNDR
SDSQQLRLESDRNLVRVVTIHKSKGLEYPLVWLPFICGFRQQNQALYHDRETFSAMLDLQ
QSEDSLTLAEEERLAEDLRLLYVALTRSVYHCSIGVTPLYSGNRRQGNSDIHRSAMGYLL
QRGQPGNAAFLADALQELGQHDGIQWYSATEMDAALWQDNQLQPELLTARIFTGQRQNSW
RVTSYSGLQQQGASHHYDLLPRFDTDAAGEKGESAQLLLSPHTFPKGAAPGTFLHDLLEN
VDFTQPINSDELNEKVLLQGLESHWTPVLQQWLETILSSPLDEQGIRLKDISAAERQAEL
QFYLPIGPLLQAERLDALVKHYDPLSARCPELVFRQVQGMLKGFIDLVFCWQGRYYLLDY
KSNWLGESAESYTPQAMADAMCDHRYDLQYQLYSLALHRYLRHRIADYDYQRHFGGVFYL
FLRGIEKDRPGQGVFHCRPEWALVDGLDRLFSGQEAIA
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgacggttgcacaacctttaaggttagatccattaacgctccctctgtttggggagcgt
ttaatagaagcatcagcaggaacgggaaaaacctatactcttgcggtgctttatttgcgt
ttactgttgggactggggcagcaagcagcttaccctcgtaagctttcggtggaagagata
ctggttgtaacttttaccgaagcggcaacagaagagctacgtaaccgtatccgggataat
attcaccgtttacgtattgcctgtattcgtaatgacagcagcgatccgttgctgttgcaa
ttgttgacagagttagcggataaagaagaagcaagcgatttattattggctgccgaacgc
caaatggatgaagcagctatttataccattcacagtttttgtcagcgtatgctgagccat
aatgcttttgaatcaggcgttttgtttgagcaatcgctcattgaagatgagcttccctta
agacgccaggcggtcgcggatttctggcgtcgtcactgttaccccttacctctacctgtt
gcacaggcgataagcaccgagtggggtgggccagagcgtttgctggcagacgtcatgccc
tatttgcacggggaagcccctcagttacttcagccgtcgtctctggatgatatcctgctg
cggcatcagcagattattgagcgcatcgaatctctaaaacaacagtggcgtgcatcgttt
tccggactggagtcattaatcagtcagtccggggtagataaacgtagctatagcactaaa
catctgcccaactggctgcaaaaggttaatatgtgggcagagcaggagactcaggactat
acgctgcccaaagagctgaataattttcgccaatcggtgctgtatgaaaaaactaaaaaa
ggtgaagcgccggtagaccctttatttactgccgttgatttgatctattctgagcctttg
accctgcgcgatctcatcttgtcaaaagccattagcgaagttcgcctgtcggttcagcaa
gaaaaacgtcggcgtgctgaaatggggtttgacgatctgttaagtcggttagactcagct
ttacagcgctccggggcagaggctttggcgcaggctatcaggcagcgctatccggtagca
atgattgatgagtttcaggataccgacccacagcagtaccgtatattccataagctttat
ggtggccgcgaagataccggtttattactgataggggatcctaagcaggcgatttatgcc
tttcgtggtgcggatatttttacctatatgcaggccagaaatgaagtaagtaaccactac
actatggagactaactggcgctcttcctcatccatggtgagttcagttaatcaactattt
cagcaactgcccgctcccttcatttttcaacaaataccttttctgccggttaaggcggca
gaaaaaaaccaatatctgagctttgaactggatggcgataaccagccggccgtctctttg
tggttacagccgggggaaggttgtggtcttaatgaataccagcagtttatggctcgttgt
tgtgccgtgcagatccgggagtggctgaccgcagggcaacagcagcgggcatggttagtg
agtggtacacggcgccagccagtcgtagcggccgatattgctattttagtgcgtaccggt
aaagaggcctcactggtgagggatgcattaagcgccttaggcataccttctgtctatcta
tctaaccgggagagtgtgtttaccacaccggaagccaaagacgttctgtggctcttacag
gcggttttggcaccggagaaagagagaacattgcgtagcgctttggccagtagcctgttg
gggctggatgcccgccagattgatgatattaatcgggatgaacgggaatgggaccgactg
gtagaagaatttagtggctatcgccagctttggttaaagcgcggtgtattgcccatgttg
cgagaggtgatgtctcggcggcaactggcggagaatctgctggtgacgctgggtggggaa
cgccgattaactgacattatgcacattggtgaactgttgcaggaagcctcactaaagctg
gagagtgaacactcactggtacgctggttagcgcagcagataactcagcctaacgatcgt
tcagatagccaacagctgaggctggagagcgatcgcaatctggtgagagtggtgactatt
cataaatcgaaaggattagagtacccactggtctggctacccttcatttgtggctttcgc
cagcagaatcaggcgctttatcacgaccgtgaaactttctcagccatgctggatttacag
caaagtgaggattcgctaactttggccgaagaagagcgtctggctgaagatttgcgtttg
ctttatgtggcacttactcgttcggtttatcattgcagcattggcgtaacgccgctgtat
tcaggaaaccggcgacagggtaattctgatatacatcgcagcgcgatgggatatttacta
cagcgcgggcaaccgggtaacgctgcttttttagccgatgctttgcaggaactgggacaa
catgatggtattcaatggtattcggccacagagatggatgcggcactgtggcaggataat
caattacagccagagctactgacagcccgtatttttaccggccagcgtcaaaacagctgg
cgtgttaccagttattcaggtttgcagcagcagggggcttcccatcactacgacttattg
ccgcgttttgataccgatgccgcaggagaaaagggtgaaagtgctcagctgttgttgtcc
ccccatacttttccaaaaggtgcagcaccgggaacttttctgcatgatttgctggagaat
gtcgattttacccagccaataaacagtgatgaattaaatgaaaaagtgctgttacaaggg
ctggaaagtcactggacgcccgttttgcagcaatggttagaaactattctctcttcgcca
ttagatgaacaagggatacgtttaaaggatatttcagcggccgagcgtcaggctgaactc
cagttctatttacccattggcccattgttgcaggcagaacgtttagacgctttggttaag
cattatgacccactgtctgcccgctgtccggagctggtttttcggcaggttcagggtatg
ttaaagggatttattgatctggtattttgctggcaggggcgctattacttgctggactat
aagtctaactggttgggagaaagtgcagaatcctataccccacaggcaatggctgacgct
atgtgcgatcatcgttacgatctccagtatcaactttattcactggcacttcatcgttac
ttacgccatcgtattgctgattacgattatcagcgtcatttcggtggggtgttctatctt
tttctgcgcggtattgagaaagataggccagggcaaggggtatttcattgtcggcctgaa
tgggcgctggtggatggattagatcgcctgtttagcggtcaggaggcgatcgcctga
DBGET
integrated database retrieval system
