Limnobaculum zhutongyuii: EKN56_06905
Help
Entry
EKN56_06905 CDS
T06157
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
prag
Limnobaculum zhutongyuii
Pathway
prag03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
prag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EKN56_06905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prag03400
]
EKN56_06905
Enzymes [BR:
prag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EKN56_06905
DNA repair and recombination proteins [BR:
prag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EKN56_06905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
MFD_D3
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
RecG_dom3_C
DUF6007
Motif
Other DBs
NCBI-ProteinID:
QBH96145
UniProt:
A0A411WIX5
LinkDB
All DBs
Position
complement(1583592..1587041)
Genome browser
AA seq
1149 aa
AA seq
DB search
MSLQHRFTLPERPGDLRQIGHLYGSSIAVISAEIINRHSGPVLLIAADMQQALRINDELR
QFTRKPVTALPDWETLPYDSFSPHQEIVSSRLSSLYQLPQMQDGVMILPVNTLMQKVCPH
SFLMGHALVAKKGDRLSRDNLRAQLEQAGYRSVDQVLEHGEFATRGALLDLFPMGSEEPY
RLDFFDDEIDSIRLFDVDTQRTLNEVEHINLLPAHEFPTDKNAIELFRSQWREQFEVRRD
PEHVYQQVSKGVWPAGIEYWQPLFFSQPLPALFSYLPENTLLVSLGNIEQAAERFWADAS
QRFDNRRVDPMRPLLPPDNLWLRVDQLFAELKQWPRIQLDHESVSKKAGSLNLDYQPLPD
IAVQHQNKSPLDNLRRFIESFAGQVVFSVESEGRRETLQELLARIKLRPVLIDELAQAQQ
PGQYLMIGGCEHGFLDNNNQLAVICESDLLGERIMTRRQDNRRTINTDTLVRNLAELRPG
QPVVHLEHGVGRYAGLTTLEAGGIKAEYLILTYAGEDKLYVPVSSLHLISRYSGGAEENA
PLHKLGGEAWSKARQKAAEKVRDVAAELLDIYARREAKPGFAFKQDREQYQQFCESFPYE
PTPDQTNAIGAVLGDMCRTNAMDRLVCGDVGFGKTEVAMRAAFLAVMNNKQVAILVPTTL
LAQQHYDNFRDRFANWPVRIEVMSRFRTAKEQQQILEAAVEGKIDILIGTHKLLQSDLRW
KDLGLLIVDEEHRFGVRQKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDDLIIREAILREVLRGGQVYYLYNDVASINKAAEHLTQLVPEARITI
GHGQMHERDLERVMSDFHHQRFNVLVCTTIIETGIDIPNANTIIIERADRFGLAQLHQLR
GRVGRSHHQAYAYLLTPHPKVMTTDAVKRLEAVASLEDLGAGFALATHDLEIRGAGELLG
EDQSGQITTIGFSLYMELLESAVDALKDGREPSLEDLTQSQTDVELRVPALLPDDYMPDV
NTRLSFYKRIASAMTEDDLDELKIELIDRFGLLPDATRNLLQTAAIRQRAKKLGIKRIEG
NEKGGFIEFSERNHVDPSYLIGLLQKQPQRYRLDGPTKLKFNIDLTDRIKRLEFITELLG
NFEQHRLAS
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgtcccttcaacatcgctttacgctaccagagcgcccgggtgacttgcgtcagataggt
catttatacggttcttccattgccgttatcagtgccgaaatcattaaccggcattctggt
ccggttctgttaattgctgcggatatgcagcaggctctgcgaattaacgatgaactgcgt
cagtttacccgcaagcctgtaacggcgctgcccgattgggagacgctgccctatgacagt
ttctctccccatcaggagattgtctcttcacgcctctccagcctgtatcaactaccacag
atgcaagacggcgtgatgattctgccggttaacaccctgatgcagaaagtttgtcctcat
tcattcttgatgggacacgcactggtggcgaaaaaaggcgatcgcctgtcgcgagataat
ttgcgcgcccagttagaacaggcaggttatcgctcggtagatcaggtactggaacacggt
gagtttgctacccgtggcgctctgctggacctcttcccgatgggaagcgaagagccttat
cgcctggacttttttgatgatgaaatcgacagtattcgcctgtttgatgtagacactcag
cgcaccctgaacgaagtggagcatattaatctcctgccggcccatgagttcccaacggat
aagaatgctattgaattatttcgtagccagtggcgcgagcaatttgaagtacgacgcgat
ccggaacatgtttatcaacaggtctctaaaggcgtctggcccgccggtattgaatactgg
cagccactctttttcagtcaacctcttccagccctgtttagctatttaccagagaatact
ttgctggttagtctgggaaatattgaacaagccgccgaacgtttttgggccgatgcttca
cagcgttttgataatcgtcgtgttgatcccatgcgtcctcttctgcctccggacaacttg
tggttacgcgttgaccaactatttgctgaattaaaacagtggccacgtattcagcttgat
catgaaagcgttagtaaaaaagcaggtagcctgaatctggattatcagccgctaccggat
attgccgttcagcatcaaaataagtcaccgttagataacctgcgtcgctttattgaatct
tttgcagggcaagtggtgttctcagtggaaagtgaaggccgcagagagacattgcaggag
ctattagcgcgcattaagttacgccctgtattaatagatgaactcgctcaggcgcaacag
ccaggccagtatctgatgattggcggctgtgaacacggttttcttgataataacaaccag
cttgccgttatctgtgaaagcgacctgttaggcgagcgtattatgactcgccgtcaggat
aatcgacggacaattaataccgataccctggtgcgtaacctggcggagcttcgcccggga
cagccagtagttcatcttgaacacggcgtcggtcgctatgcgggtctgactacattagaa
gcgggtggtattaaagctgaatacttgattctgacttatgccggtgaagataagctgtat
gttccggtctcttctttgcatctcatcagtcgttattccggtggtgccgaagaaaatgcg
ccgttgcataaactgggtggcgaagcctggagcaaagcgcggcaaaaagcggcagaaaaa
gtacgtgatgtggcggcagagctactggatatttatgcccgtcgtgaagccaagccggga
tttgctttcaaacaggatcgcgaacagtatcagcaattctgtgaatcattcccttacgag
ccaacgccagaccaaaccaatgccattggcgcagttttaggggatatgtgccggactaac
gccatggaccgtttggtatgcggtgacgtgggctttggtaaaaccgaagtggcgatgcgg
gccgcattccttgcggttatgaataataagcaagtcgctattctggtacccactacgctg
ttagcccaacagcattatgataactttcgcgatcgctttgccaactggccggtgcgcatt
gaggtgatgtcgcgcttcagaaccgctaaggaacaacagcaaattttagaggctgccgtc
gaaggtaagattgatattctgattggcacccacaaattacttcagagcgatctgcgctgg
aaagatttaggcttactgattgtcgatgaagagcaccgctttggtgttcgtcagaaagaa
cgcattaaagcgatgcgtgccaatgtggatattctgacattaaccgctacccctattcca
cgaaccttaaatatggccatgagcggtatgcgcgacctgtcgattatcgccacgccacca
gcacgtcgtttagcggtgaaaacctttgttcgcgagtatgatgacctgattattcgcgaa
gctattttgcgggaagtgttacgtggtgggcaggtctactacctctataatgatgtcgcc
agcatcaataaagcagcagaacatctgactcagttagtacccgaagctcgtatcaccatt
ggtcacggccaaatgcatgagcgagatctggaacgcgtcatgtcagacttccaccatcag
cgttttaacgttctggtgtgtaccaccattattgaaaccggtattgatattccaaatgcc
aataccattattattgaacgtgctgaccgttttggactggcgcaacttcatcaattacgt
gggcgtgtgggccgttctcaccatcaggcttacgcctatctgctcactccacatccaaaa
gtcatgacgaccgatgcggttaagcgtctggaagccgtggcttcactggaagatttaggc
gctggttttgcattagccacgcacgatttggagattcgcggtgccggtgagctgttagga
gaagatcaaagtggtcaaatcaccactatcggtttctcgctgtacatggagcttctggaa
agcgcagtagacgcactgaaagatggccgcgaaccgtcattagaagatttgactcaaagc
cagaccgatgtagaactacgagtcccggcgctgttgccagacgactatatgccagatgta
aatactcgcctgtcattctacaagcgtattgccagtgcaatgaccgaagacgatctggat
gaactgaaaatcgaactgattgaccgttttggcctgctacctgatgcgacccgtaatctg
ttacaaaccgcagccatacgtcaacgcgctaaaaagctgggaattaagcgtattgaaggc
aatgaaaaaggcggatttattgaattcagtgagcgtaaccatgtcgatccaagttatctg
attggtctgctacagaaacaacctcaacgctaccgtctggatggtccaaccaaactgaag
tttaatatcgatttaactgacagaataaagcggttggaatttatcactgaattgctggga
aattttgaacaacaccgattggcatcttaa
DBGET
integrated database retrieval system
