Limnobaculum zhutongyuii: EKN56_07100
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Entry
EKN56_07100 CDS
T06157
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
prag
Limnobaculum zhutongyuii
Brite
KEGG Orthology (KO) [BR:
prag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
prag03032
]
EKN56_07100 (topA)
03400 DNA repair and recombination proteins [BR:
prag03400
]
EKN56_07100 (topA)
Enzymes [BR:
prag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
EKN56_07100 (topA)
DNA replication proteins [BR:
prag03032
]
Prokaryotic type
DNA Topoisomerases
EKN56_07100 (topA)
DNA repair and recombination proteins [BR:
prag03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
EKN56_07100 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Motif
Other DBs
NCBI-ProteinID:
QBH96183
UniProt:
A0A411WJ16
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Position
1627834..1630422
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AA seq
862 aa
AA seq
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MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSVTKSSPATKGTKVKKDAK
QALVNRMGIDPYHDWAAHYEILPGKEKVVAELKALAEKADTIYLATDLDREGEAIAWHLR
EVIGGDDNRYRRVVFNEITKNAIRQAFEEPGELNIDRVNAQQARRFMDRVVGYMVSPLLW
KKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEYWELHADLSHGKDVPLQMQVTHYNDK
AFKPVTRDETHAAVALLEKAHYEVLEREDKPTSSKPSAPFITSTLQQAASTRLGFGVKKT
MMMAQRLYEAGHITYMRTDSTNLSQDALAMVRGYITDNFGDKYLPEQPNQYSSKENSQEA
HEAIRPSDVNVQAEQLKDMEADAQRLYQLIWRQFVSCQMTPAKYDSTTLTVKAGDFLLKA
KGRTLRFDGWTKVLPALRKNDEDKTLPVIAVGTALKLEQLLPGQHFTKPPARFSEASLVK
ELEKRGIGRPSTYASIISTIQDRGYVHTENRRFYAEKMGEIVTDRLEENFRDLMDYDFTA
RMENDLDSVATNKASWKTVLNNFFSEFNNQLEKAEQEPEEGGMRPNQVVLTSIDCPTCSR
KMGIRTASTGVFLGCSGYALPPKERCKQTINLIPESEVLNVLEGDDAETNALRARHRCKK
CGTAMDSYLIDNQRKLHVCGNNPECDGYEIEEGEFRIKGYDGPVIECEKCGSEMHLKVGR
FGKYMGCTNPDCKNTRKILRNGDIAPPKEDPVPLPELPCEKSDAYFVLRDGAAGVFLAAN
TFPKSRETRAPTVEELRRFKDRLPEKLSYLADAPVADPEGNKSIVRFSRKTKQQYVASEK
NGKATGWSVFYTDGKWAEAPKK
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagcgctcgtcattgtggagtccccggctaaggccaaaacgattaataaatat
ttaggaaatgactacgtggttaagtccagcgttggtcatatccgggatttgccaacgagt
ggttcggtaactaaaagcagccctgcaacaaaaggcaccaaagtaaaaaaggatgctaaa
caggcgttggttaaccgaatgggaatcgatccctatcatgattgggcagcacattatgaa
attttgcctggtaaagaaaaagtcgttgctgaactgaaagcgttagctgaaaaagccgat
accatctatctcgcaaccgaccttgaccgcgaaggggaagctatagcgtggcacctgcgg
gaagttattggtggtgacgataatcgctatcgtcgggttgtgtttaacgagattaccaag
aatgcgattcgtcaggcgtttgaagagccgggcgaactgaatatagacagggtcaatgcc
cagcaggcgcgtcgttttatggaccgcgtcgtaggctatatggtttccccattattatgg
aaaaagattgctcgcggtttatcagccggtcgggtgcagtctgttgccgtgcgtctggta
gtggagcgtgaacgcgaaatcaaagcatttgttcctgaagagtattgggaactgcacgcc
gatttaagtcacggtaaagacgtgccactgcaaatgcaggtgacacattataatgataaa
gcgtttaagccggttacgcgtgatgaaactcacgcggcggtagcactgttggaaaaagcg
cactacgaagtgttggagcgtgaagataagccaaccagcagtaaaccaagtgcaccattt
attacctctacgctgcaacaggctgccagtactcgcctgggctttggggtgaagaaaacc
atgatgatggctcaacgtctgtatgaagccggtcatatcacctatatgcgtactgactca
accaacctgagtcaggatgctctggcaatggttcgcggctatattaccgacaattttggt
gataaatatttgcccgagcagccaaatcaatacagcagcaaagagaactcacaggaagcg
cacgaagcgattcgtccttctgatgtgaatgttcaggctgagcagctaaaagatatggaa
gcagacgcacagcgtctgtatcaattgatctggcgtcagtttgtctcttgtcagatgact
ccggctaaatatgactctactacgttaacggtcaaagcaggtgacttcctgcttaaagcc
aaagggcgcactctgcgttttgatggctggacgaaagtactgcctgcattacgtaaaaac
gatgaggataaaaccttaccggtaatcgcagtaggtactgcactgaagctggaacagtta
ctgccaggacaacattttactaaaccaccggcacgttttagcgaagcctcattggttaaa
gagctggaaaaacgcggcattggtcgcccatctacctatgcgtcgattatctcgactatt
caggaccggggctatgttcatacggaaaaccgtcgtttctatgcggaaaaaatgggtgaa
atcgttaccgatcgtctggaagagaacttccgcgacttaatggattacgattttaccgct
cgtatggaaaacgacctggacagcgtggcaaccaacaaagcttcctggaaaacggtactg
aataatttcttcagcgagtttaataaccaactggagaaagccgagcaggagcctgaagaa
ggcggtatgcgcccaaatcaggtggtgctgacctctatcgattgcccaacctgtagtcgt
aaaatgggtattcgtaccgccagtaccggcgtgtttttaggttgttctggttatgcatta
ccgccgaaagagcgctgtaagcagacgattaacctgatccctgaatctgaagtactaaac
gtgcttgaaggggatgatgcagaaactaacgcattacgtgcccgtcatcgttgtaaaaaa
tgcggtacggcaatggacagctacctgatcgataatcagcgtaaacttcacgtctgtggt
aataaccctgagtgtgatggttatgagattgaagagggtgagttccgcattaaaggttat
gacggtccggtgattgagtgtgagaaatgtggttctgaaatgcacctgaaagtagggcgt
tttggtaagtacatgggttgtaccaatccggattgtaaaaacacccgtaagattttacgt
aacggcgatattgcaccgccgaaagaggatccggttccattaccggagctgccttgcgaa
aaatcagatgcttattttgtgttacgtgacggtgcggcaggcgtattccttgcggccaac
accttccctaaatctcgtgaaacacgtgcgccaacagtagaagaattgcgtcgctttaaa
gatcgtctaccagagaagcttagttatctggctgatgccccggttgccgatcctgaaggt
aacaaatcgattgttcgttttagtcgtaaaacgaaacagcaatatgtggcatctgaaaag
aatggcaaggcgaccggttggtcagtgttttacaccgatggtaagtgggctgaagcaccg
aaaaagtaa
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