Limnobaculum zhutongyuii: EKN56_08350
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Entry
EKN56_08350 CDS
T06157
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
prag
Limnobaculum zhutongyuii
Brite
KEGG Orthology (KO) [BR:
prag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
prag03016
]
EKN56_08350
Enzymes [BR:
prag01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
EKN56_08350
Transfer RNA biogenesis [BR:
prag03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
EKN56_08350
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
S1CSD-TOTE-2
Rho_RNA_bind
PilZ
ODP
Motif
Other DBs
NCBI-ProteinID:
QBH96407
UniProt:
A0A411WJR1
LinkDB
All DBs
Position
1905966..1907909
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AA seq
647 aa
AA seq
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MFQNNPLLAQLKQQLHANTPRVEGIVKATEKGFGFLEVDNQKSYFIPPPQMKKVMHGDRV
SATIHTEKDRELAEPETLIEPFLTRFIGRIQQKNDRLMVVPDHPMIKDVIPCKPVKGLTH
ALTQGDWVVAEITNHPLKDNRGFQAQINEYITHGDDHLAPWWVTLSRHQLERTAPEWTSE
SIQDDGIVRRDLTELNFVTIDSESTEDMDDALYVEQLDNQLLRLSIAIADPSAYVAAGSE
LDNIALKRAFTNYLPGFNIPMLPRELSDNLCSLQPNQRRPALVCQVTISPDGSISDDIEF
FCAWVTSKAKLDYEKLSDWLEGIDGWKPEQPEIAQQVELLHQVALRRISWRTEHALVFKD
RPDYRFILGENGQVLDIVTEYRRIANRIVEESMIVANICAAIVLKTRLGYGIFNVHAGFD
PTVVDQAINILELNGAEFNKEKILTLDGFCELRRFLDKQPTSYLDSRIRKYQTYAEISTA
PAPHYGLGLEAYATWTSPIRKYGDIINHRLLKALIHDRPSTAPDESVMQPLTERRRANRI
AERDVSDWLYARFLQDKAGTDIRYQAEIMDISRGGMRIKLIENGAVAFIPAPFIHPVRDE
LVCSAENGTIQLNGNVIYRQGDSLEVTIAEVRMETRSIIARPAPSLS
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaaaataacccgctgctcgctcagcttaaacagcaacttcatgctaatactcca
cgggttgaaggcattgttaaagccaccgaaaaagggtttggctttcttgaagtagataat
caaaaaagctacttcattccacctccacaaatgaagaaagtcatgcatggagaccgcgtt
tcagccactatccatacggaaaaggatcgtgagttggcggaaccggaaacgctcatagag
ccatttctgacgcgctttattggtcgtattcaacagaaaaatgaccggttaatggtggtt
cccgatcacccaatgattaaagatgtcattccgtgcaagccggtaaaaggattgactcat
gctttaactcagggggattgggtcgtcgcagagataaccaatcatccattgaaagataat
cgtgggtttcaggcgcaaatcaatgagtacattacccatggggatgaccatttagcacca
tggtgggtgacattgtcacgtcatcaattagaacgtacagcaccagaatggacgtcagaa
tctattcaggatgacgggattgttcgccgtgatttaaccgaattaaactttgttactatt
gatagcgaatctaccgaagatatggatgatgcgctgtatgttgaacaactggataatcag
ttacttcgactttccattgctattgccgatcccagtgcttatgtcgctgccgggagtgaa
ctggataacattgctttaaaacgcgcgtttaccaattatttgccgggttttaatattcca
atgctcccaagagagctgtcggataacctttgttctttacagccaaatcaacgtcgtcca
gcactggtttgtcaggtgactatctctcctgatggctcaatcagtgatgatattgagttt
ttctgcgcatgggtaacgtctaaggctaaacttgactatgaaaagctttcagactggctg
gaaggtatcgacggctggaaaccagaacaacctgaaatagctcaacaagtagaattgctg
catcaggtggcattacgtcgcatatcctggcgcacagaacatgcactggtatttaaagat
cgtcctgactatcgcttcattcttggtgaaaatggtcaggtattggatatcgttaccgaa
tatcgtcgtatcgctaatcgtattgttgaagaatcaatgattgtggccaacatctgtgct
gctatcgtattaaagacgcgattaggttatggcatctttaacgttcatgcgggttttgac
cctaccgtggtcgatcaggcgatcaatattctggaactgaatggagcagaatttaataaa
gagaagatcctgacgcttgatggattctgcgaacttcgacgtttcctggataaacagcca
acatcctatctggatagccgtattcgcaaataccaaacttatgcagaaatcagtacagcg
ccagcgcctcactatggattgggtttggaagcttacgctacctggacctctccaatccgt
aaatatggcgatattatcaatcatcgcttattaaaagccttaattcacgatcgcccctct
acagcgccagatgaaagtgtcatgcagccgctgacagaacgccgtcgggctaatcgcatt
gctgaacgtgatgtcagtgactggttatatgctcgctttttacaggataaggctggaaca
gatattcgctatcaggcagaaattatggatatctcccgtgggggtatgagaattaaactg
atagaaaatggcgccgtagcctttattccggcgccatttattcacccagtgcgtgatgaa
ctggtttgtagcgccgaaaacggtactatacagctcaatggcaatgtgatttatcgtcag
ggtgattcactggaagtgactattgctgaggttcgaatggaaacgcgcagtattatcgct
cgcccggcaccctcactctcttaa
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