Limnobaculum zhutongyuii: EKN56_09165
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Entry
EKN56_09165 CDS
T06157
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
prag
Limnobaculum zhutongyuii
Brite
KEGG Orthology (KO) [BR:
prag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
prag03016
]
EKN56_09165
Enzymes [BR:
prag01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
EKN56_09165
Transfer RNA biogenesis [BR:
prag03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
EKN56_09165
Prokaryotic type
tRNA splicing ligases
EKN56_09165
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
CTD2
Motif
Other DBs
NCBI-ProteinID:
QBH96558
UniProt:
A0A411WK67
LinkDB
All DBs
Position
complement(2086053..2087276)
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AA seq
407 aa
AA seq
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MKPSIQVMNVENGRPVKMWTQGVPVEDEAKRQLENTAKMPFIFKHIAVMPDVHLGKGSTI
GSVIPTIGAIIPAAVGVDIGCGMIAVRTSLHASDLPDNLSAVRDAIERAVPHGREVNRSK
RDKGAWNDVPETVNRAWLQLDPDFKQIIDKYPKLKNTNNRVHLGTLGTGNHFIEVCLDEN
QAVWFMLHSGSRGIGNAIGSLFIELAKKDMQRHFINLPHQDLAYLVEGSEHYNDYVFAVD
WAQRYARLNRETMMNNVIAAVRTVITKPFTLEMEAVNCHHNYVQKEQHFGQDVLVTRKGA
VSAQAGELGIISGSMGARSFIVRGKGNPDAFCSCSHGAGRTMSRTEAKRRFSIEDQIKAT
AGVECRKDSDVIDEIPMAYKDIDAVMTAQSELVEIVHTLKQVVCVKG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccctcaattcaggtaatgaacgttgagaatggtcgcccggttaaaatgtggact
cagggagttccggttgaagacgaggctaagcgtcagttagagaacacggccaaaatgccg
tttatctttaaacatattgcagtgatgccggacgtacatttgggtaaaggttcaaccatt
ggctctgtcattcctaccataggggcgattattcccgctgcggtaggtgtggatatcggt
tgtgggatgattgcggtgagaacatctctgcatgcaagcgatttaccggataacttatct
gcggtgcgagatgcgatagaacgagcggtaccgcatggtcgggaagttaatcgatccaag
cgagataaaggagcatggaatgatgtgcctgaaacggtaaaccgtgcatggttacagtta
gatcctgactttaagcagattattgataagtaccctaagttgaaaaataccaataatcgg
gttcacttaggaaccttgggaacaggtaaccactttatcgaagtttgtctggatgagaat
caggctgtgtggtttatgttgcactccggttctcgtggtatcggtaatgctatcggaagc
ctgtttattgaactggcgaaaaaagatatgcaacgacactttataaacctaccgcatcag
gatttagcttatctggttgaaggtagcgaacattataacgattacgtttttgccgttgat
tgggcgcagcgttatgcccgattaaaccgtgaaacgatgatgaataacgtgattgctgca
gttcgtactgtaatcactaagccctttactttagagatggaagcagtgaactgccatcat
aactatgtacagaaagaacagcattttggtcaggacgtactggtaactcgtaaaggtgcg
gtgagtgctcaggccggtgaattggggattatttccggttctatgggagcccgatctttt
atcgtacgaggaaaaggtaacccggatgcattctgttcctgcagtcacggagcaggtcga
acaatgagtcgtaccgaagcaaaacgtcgtttctcgatcgaggatcagatcaaagccacg
gcgggtgttgaatgccgtaaagactcagatgttattgatgagatacctatggcttataaa
gatattgatgcagtgatgaccgcacagtcagagctggtagagattgttcatactttaaag
caggtggtttgcgttaaagggtaa
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