Limnobaculum zhutongyuii: EKN56_12245
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Entry
EKN56_12245 CDS
T06157
Symbol
truD
Name
(GenBank) tRNA pseudouridine(13) synthase TruD
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
prag
Limnobaculum zhutongyuii
Brite
KEGG Orthology (KO) [BR:
prag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
prag03016
]
EKN56_12245 (truD)
Enzymes [BR:
prag01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
EKN56_12245 (truD)
Transfer RNA biogenesis [BR:
prag03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
EKN56_12245 (truD)
Prokaryotic type
EKN56_12245 (truD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
QBH98772
UniProt:
A0A411WRI1
LinkDB
All DBs
Position
complement(2757762..2758799)
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AA seq
345 aa
AA seq
DB search
MSLSWLYGEPTATGVLKKSPQDFCVKEDLGFEPDGEGEHVLVYLRKTGCNTQFVADNLAR
FAKVSGRVVSYAGLKDRHAVTEQWFCLQMPGKDTPDFNAFTLEGCEVLKVARHRRKLRIG
TLKGNFFQLVLRDISLKEDVESRLQKIQQSGVANYFGEQRFGRQGNNLVMAERWANNEIS
VKERNKRSFYLSAARSAMFNHVASQRIAQSLHQQVIPGDAMQLSGRGSWFVAQPEELESL
QQRLNDGELRVTAPLPGDGELGTQLEAQIFEQQVLVDDQTLFSLVKRERVEPARRAILVQ
PQQMAWQWLDDATVSVSFWLPAGSFATSVVRELMLTATSEDIPEE
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgtcattatcctggctatacggtgaaccaactgccaccggcgtccttaaaaagtcgcca
caagacttttgcgttaaagaagatctgggctttgaacccgatggtgagggtgaacacgtg
ctggtctatttacgcaagactggctgcaatactcagtttgtcgccgataatctggcacgc
tttgccaaagtatccggtcgggtggtgagctatgccggacttaaagatcgtcatgcggta
accgagcagtggttttgcctgcagatgccgggtaaagacacgcctgattttaatgctttt
actctggaaggctgtgaagtcctgaaagtagcacgtcatcgccgtaagttgcgcattggt
acgcttaaaggaaattttttccaactggtgctacgggatatcagtctgaaagaggatgtt
gagtcacgcttacaaaaaattcagcagtcgggcgttgccaactattttggtgaacaacgt
tttggccgtcagggcaataatctggtgatggcagaacgttgggctaataatgaaatcagc
gtaaaagaacgtaacaagcgcagtttttatctgtctgcagcgcgcagcgcgatgtttaac
cacgttgccagccagcgaattgcgcaatctttgcatcagcaagtgatacctggtgatgcc
atgcaactgagtggcagaggaagctggtttgtggctcagcctgaagagcttgaatctttg
cagcagcggttaaatgatggtgaattgcgggtaactgcgccattgccgggtgacggtgag
ttgggcacccagttggaagcacagatttttgaacaacaggtattggttgatgaccaaacg
ctgttttcactggtgaaacgcgagcgggttgaacctgctcgtcgggctattttggttcaa
cctcagcaaatggcatggcaatggctggatgatgctacggtatcggtcagcttttggtta
ccggcgggtagttttgctaccagcgtggtgcgagagctgatgttaaccgcaaccagtgaa
gatataccggaagagtga
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