Limnobaculum zhutongyuii: EKN56_12345
Help
Entry
EKN56_12345 CDS
T06157
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
prag
Limnobaculum zhutongyuii
Brite
KEGG Orthology (KO) [BR:
prag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
prag03009
]
EKN56_12345 (rlmD)
Enzymes [BR:
prag01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
EKN56_12345 (rlmD)
Ribosome biogenesis [BR:
prag03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
EKN56_12345 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
RrnaAD
PCMT
Cons_hypoth95
MTS
Methyltransf_11
Methyltrans_SAM
TRM5-TYW2_MTfase
Ubie_methyltran
Methyltransf_15
DAC
Methyltr_RsmB-F
Methyltransf_4
Methyltransf_23
CMAS
FtsJ
zf-C3HC4_3
Motif
Other DBs
NCBI-ProteinID:
QBH97110
UniProt:
A0A411WLR9
LinkDB
All DBs
Position
complement(2780556..2781872)
Genome browser
AA seq
438 aa
AA seq
DB search
MAQFYSPGRRKATQQTINIIPHELDTQGQGVARDNGKTIFISGALPQEQVEAQIYENKRN
YSKAKAIRILSPSPQRMTPPCSHYGICGGCNQQHVSTDLQHSSKSKALSQLFKRETGLEP
AQGAVIFSQGYHYRRRARLGLQYQPKQQRLQMGFRQRASNDLVEMTECPILVSELEQLLV
PLKDCLSALSVVKKLGHAELVMADNGPLLVLRHLVPLAENDRQHLLQFAERHQIAIYLAG
ESDSLERLIGEDPYYQVDDLTLGFNPRDFIQVNAGVNQLMVEQALAWLELQPTDRVLDLF
CGMGNFTLSIAKRALRVTGVEGVEALVSRGQQNARINGLSNVEFLHHNLELDVSQQSWAR
EGFDKVLLDPARAGAAEAMAQIVSLNPERIVYVSCNPVTLVEDSKVLLSGGYQLNQLRML
DMFPQTGHIESMALFIKK
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaattttactcgcccggccgccgtaaggcgacacaacaaactatcaatattatt
ccccatgaacttgatactcaagggcagggggttgctcgtgataacggaaaaactattttt
atttccggcgcgcttcctcaggagcaggttgaagcgcagatttacgagaataaacgaaat
tattctaaagccaaagcgatccgtatcttatcgccgagcccgcagcgaatgacaccgcct
tgctcacattatggtatttgcggaggctgcaatcagcaacatgtttccacagatttgcag
catagtagcaaatctaaagcgctcagccagttgtttaagcgagaaaccgggctggaacct
gctcagggcgcagtcattttttctcagggatatcattatcgacgccgtgcccgactcgga
ttgcagtatcaaccgaagcaacagaggctgcaaatgggctttcgccagcgggcttctaac
gatttggtggaaatgacggaatgcccgattctggtttctgagctggagcagttgctggta
cctttaaaagattgtcttagtgcgttatccgtggtgaagaaactggggcacgccgagctg
gtgatggcggataacggacctttactggtgctgcgccatttagtgccgctggcagaaaac
gatcgtcaacatctgctacagtttgcagaacgtcatcagatagcgatttatctggcggga
gagagcgattcgctggaacggctgattggtgaagatccttactatcaggtggatgattta
acccttggttttaatccgcgggattttatccaggttaacgccggtgttaatcagttaatg
gttgagcaggcgctggcctggctggaattacagccgactgacagagttctggatctgttt
tgcggcatgggaaactttaccctgtctatcgctaagcgtgctttacgggtgaccggagtg
gaaggtgtcgaggcgttggtaagcagagggcaacagaatgctcgcataaatggcttatca
aacgttgagtttttgcaccacaatttagaactggatgtcagtcaacagtcgtgggcaaga
gaaggttttgataaagtgttgctggatccggcccgggcgggcgcagcagaagccatggcg
caaattgttagtttaaaccctgaacgcattgtgtatgtgtcctgcaatccagtgacgctg
gtggaagacagtaaagttctgttgtcaggtggataccagttaaaccaactgcgtatgctg
gatatgtttccacaaacggggcatattgagtccatggcgttatttattaaaaagtaa
DBGET
integrated database retrieval system
