Limnobaculum zhutongyuii: EKN56_12420
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Entry
EKN56_12420 CDS
T06157
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
prag
Limnobaculum zhutongyuii
Brite
KEGG Orthology (KO) [BR:
prag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
prag03009
]
EKN56_12420 (srmB)
Enzymes [BR:
prag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EKN56_12420 (srmB)
Ribosome biogenesis [BR:
prag03009
]
Prokaryotic type
rRNA helicases
EKN56_12420 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
AAA_11
CMS1
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QBH97124
UniProt:
A0A411WLN1
LinkDB
All DBs
Position
2797017..2798357
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AA seq
446 aa
AA seq
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MTVLDFSALDLDQPLLDALSDKGYERPTAIQAAAIPAAMDGRDVLGSAPTGTGKTAAFLL
PALQHLLDYPRKKSGPPRILILTPTRELAMQVAEQARELAAHTHLDIATITGGVAYMNHA
EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIERIAAETRW
RKQTLLFSATLEGEAIRDFAERLLNDPVEIEADPSRRERKKIHQWYYRADDIKHKTALLC
HLLKQPDIHKAIIFVRKRERLHELVTWLRDAGITCFYLEGEMVQAKRNEAIKRLQDGTVN
VLVATDVAARGLDILDISHVFNFDLPRTADTYLHRIGRTGRAGKKGIAISLVESHDHLLL
GKIERYLQEPLKMRVIDELRPTSKAPGPTNGRKQSKRAKEKAAEKKKEKNKEKVKVKVRH
RDSKNVGKRRKPANEPASPDTPTDKA
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgacagtattagacttttccgcactcgatctcgaccagccgttgctggatgcattaagt
gacaagggctatgagcgcccaaccgccattcaagccgcggctattccggctgcaatggat
ggacgtgacgtactgggttccgcaccgacgggaaccggtaaaactgcggcattcctgctg
cccgcacttcagcacctgctcgattatccgcgcaaaaagtccggcccaccgcgcattctg
atcctgacgccaacccgagagctggcaatgcaggtagcagaacaggcgcgtgaactggcg
gcccatactcatctggacattgcgactattaccggcggtgtggcttatatgaatcacgct
gaagtgttcagcgagaatcaggatattgtagtcgcgactaccggtcgcctgctgcaatat
attaaagaagagaattttgactgtcgtgcggtagaaacgctaatccttgatgaagcagac
cgtatgttagacatgggttttgctcaggacatcgaacgcatcgcagccgagacccgctgg
cgtaaacaaacgttgctgttttctgccaccctggaaggggaagcgattcgtgatttcgct
gagcgtctgttaaacgatccggtagaaattgaagcagacccttcacgccgcgaacgtaaa
aaaattcatcagtggtattatcgtgctgatgatattaaacataaaaccgccctgctttgc
catttgctgaaacagcccgatatacataaagccattatcttcgtgcgtaaacgtgaacgt
ttgcatgagctggtaacctggctgcgtgatgccggtattacctgtttctatcttgaaggt
gaaatggtacaggcgaaacgtaatgaagcgattaaacgcctgcaggatggaaccgttaac
gtactggtagccaccgatgtcgccgctcgcggtctggatattctggacatcagtcacgtc
ttcaactttgacttaccgcgcactgccgacacctacctgcaccgtattggccgcaccggc
cgtgcaggtaaaaaaggtatcgctatttctctggtggaatctcacgaccatctgttgctg
ggtaaaatcgaacgctatcttcaggaaccactgaaaatgcgcgtgattgatgaattacgc
ccaaccagcaaagccccgggaccaaccaacggccgcaagcaatccaagagagctaaagaa
aaagcggcagaaaagaaaaaagagaaaaataaagaaaaggtcaaagtaaaagtccgccat
cgggacagtaaaaacgtaggtaaacggcgtaagccagccaatgagcccgcctctccggat
acacctactgataaagcataa
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