Limnobaculum zhutongyuii: EKN56_16210
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Entry
EKN56_16210 CDS
T06157
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
prag
Limnobaculum zhutongyuii
Pathway
prag02020
Two-component system
prag02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
prag00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
EKN56_16210
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
EKN56_16210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prag03021
]
EKN56_16210
Transcription machinery [BR:
prag03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
EKN56_16210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_38
Sigma70_r1_1
Motif
Other DBs
NCBI-ProteinID:
QBH97812
UniProt:
A0A411WNP2
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All DBs
Position
3631865..3633295
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AA seq
476 aa
AA seq
DB search
MKQGLQLKLSQQLTMTPQLQQAIRLLQLSTLELQQEIQIALESNPLLEQADNHDEIDSHE
ETEHEQLDTSEALQQSDIPEDLPLDASWDEIYTAGTPSGTHNDYGDDELPVFQGETTLTL
QDHLMWQMDLTPFSDLDKAIATAIIDAVDNTGYLTVSLEDIADSLGQDEVELDEIEAVLK
RIQRFDPVGVAARDLRECLLVQLSQLSSDTPYLNDARQIADHHLALLGSHDFRSLLKLTR
ISEEALKGAMQLIQSLDPRPGQSIHASESEYVIPDVLVRKVQGKWVAELNTESIPRLQIN
QHYASMANTHNASDNQYIRTNLQDARWLIKSLESRNDTLLRVTECIVERQEEFFELGAEY
MKPMVLADIAQAVDMHESTISRVTTQKYLHSPRGIFELKYFFSSHVNTDSGGEASSTAIR
ALVKKLISAENPGKPLSDSKIASMLTDQGIIVARRTVAKYRESLSIPPSNQRKQLI
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaaggtttacagctcaagttaagtcaacaattaaccatgacacctcagttacag
caggccattcgcctgttgcaactgtcgacacttgaactgcaacaagagattcaaatcgca
ctggaaagtaacccactgcttgagcaggcggataatcatgacgaaatagattcgcatgaa
gagaccgaacacgaacagctcgataccagtgaagcgctacaacagtccgatattcctgaa
gacctgcccctcgacgcctcatgggacgaaatttataccgcaggaacaccgtccggcacc
cataacgattatggcgatgacgaactcccggtgtttcagggtgaaaccaccctgaccctg
caagatcatctgatgtggcagatggatctaacccccttctccgatctggataaagccatt
gctaccgccattattgatgcggtggacaataccggctatctgacggtttcgctggaagat
attgccgacagtctgggacaggacgaagttgaactcgacgaaattgaagcggtgctgaag
cgcattcagcgtttcgacccggtgggcgttgctgcccgcgatctgcgagaatgtttgctg
gtgcagctttcccagctatcttctgataccccttatctgaatgatgctcgtcagattgcc
gaccatcatctggcactgttaggcagccatgatttccgctcattactaaaactgactcga
attagtgaagaggcactgaaaggggccatgcaactgattcagagccttgatcctcgccct
ggtcagtcaattcatgccagcgagtccgaatacgttattcctgatgtgctggtgcgcaaa
gttcagggcaaatgggtggctgagctcaatacggaaagtatcccacgcttgcagattaac
cagcattacgcctcaatggcaaatacccataatgccagcgataatcaatatatccgtacc
aatttgcaagatgcccgctggctaatcaaaagccttgaaagtcgtaacgacacgctactt
agggtaacggaatgtattgtagaacggcaggaagaattttttgagctgggcgcagaatac
atgaagccaatggttttggcagatatcgcccaagcggttgatatgcatgagtcaaccatc
tcacgcgtaacaacccaaaagtacttacatagccccagagggatatttgagttaaaatac
ttcttttccagtcacgtcaataccgatagcggcggcgaagcctcttctaccgcaatacgt
gcactggttaaaaaattgatttcggctgaaaatccaggtaagccgctgagcgacagtaaa
atcgccagcatgctaaccgaccaagggattattgttgccagaaggacggtagcaaaatac
agggagtcgttatctattcccccgtcaaatcagcgtaaacaactgatctga
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