KEGG   Limnobaculum zhutongyuii: EKN56_16375
Entry
EKN56_16375       CDS       T06157                                 
Symbol
csrD
Name
(GenBank) RNase E specificity factor CsrD
  KO
K18765  RNase E specificity factor CsrD
Organism
prag  Limnobaculum zhutongyuii
Brite
KEGG Orthology (KO) [BR:prag00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:prag03019]
    EKN56_16375 (csrD)
Messenger RNA biogenesis [BR:prag03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Others
     EKN56_16375 (csrD)
SSDB
Motif
Pfam: EAL GGDEF GAPES4 RH1
Other DBs
NCBI-ProteinID: QBH98826
UniProt: A0A411WRP8
LinkDB
Position
complement(3673148..3675085)
AA seq 645 aa
MRFTARLSIFISLLVFLTMILALMTSMLSVYFVGEEKMEKHWYALTTTVDQALIYQSPGA
YDRWLPVVMYATGVRHLTIKDEKDKIIYTHSSDNRPGFWEKFHTLSETDLELPQHPGYRM
QILYVNPILSTLFSLPILLAIIAVIVFIGLIMFWWIHWLKQQFKGLLLLEERSQRILAGE
REGAEVSDEKEWPVNTSAAINRLLSELSNMSNERVRVDKLIRSFAAQDAQTGRNNRLFFD
NQLATQLEEPNAHGVVMMIRLPELELMASEHGKDAIDDLLYTLVNMLSTFIMRHPAALLA
RYFDNDFSVMLPHRSLKEADAIAAQLVNAVDMLPVSSGIEKESLIHIGICLYHMGQTPEQ
IMDNAEQAARTAVLQGSNGWFIYDSQVTSAARGSVRWRTLLEQMLDKGGPDIYYKPAVTV
KGELNHREMLLRIHDGNDELQPAEFMPLIQQFGLTERFDRLVLSKTLPLLDRWPNDTIAV
SVTVDSLLKHSFQVWLRDNLLEKEKSYRKRIIFELAEADVCQYSDRLRPVIRLLHLLGCR
LGIVQAGLTVVSTIYIKTMPVEVIKLHPGLVRNIDRRPENQLFVDSLISACEGTNVVVMA
ASVRTHLEWETLCSHGIGGGQGEFFASPVLIPPPKEKNSGKNRHY
NT seq 1938 nt   +upstreamnt  +downstreamnt
atgagatttaccgccagattatctatttttatttctttattagtttttcttactatgatt
ttggcactgatgaccagtatgttaagtgtttattttgtgggtgaggaaaagatggagaag
cattggtatgcccttaccaccacggtggatcaggcgctgatttaccaatctccaggcgct
tatgatcgctggcttccggtggtcatgtatgccacaggcgtgcgccatctgacgattaaa
gacgaaaaagataaaatcatttatacccatagcagtgataatcgccccggtttctgggaa
aagtttcacacgcttagcgagaccgatctggagttaccccagcatcccggttatcgcatg
cagatcctctatgttaatccgattcttagcacactcttttcgttacccattttattagcc
attattgcggtgattgttttcattggtttgattatgttttggtggattcactggcttaag
cagcaatttaaaggattgctgctactggaagagcgttcccaacgtattttagccggtgag
cgagaaggtgccgaagtctcggatgaaaaagagtggccagtgaataccagtgccgctatc
aaccgactgttgtctgagttgagtaatatgagtaatgagcgggtcagggtggataaactg
attcggtcgttcgccgcgcaggatgcacaaaccgggcggaataaccgcctgttttttgat
aaccaactggcaacccagcttgaagagcctaatgctcatggcgtggtaatgatgattcgc
ctgcctgagcttgaattgatggcgagcgagcatggtaaagatgcgattgatgatttgctg
tatacactggtgaatatgttatcaacctttattatgcgccacccggcagcgttactggct
cgttattttgataatgattttagcgtcatgttgcctcaccgttcactaaaagaagctgat
gcgattgctgctcagctggtcaatgccgtggatatgctaccggtatcctctggtattgaa
aaagagtctctgattcatataggtatttgcctttatcatatgggacagacgccagagcaa
attatggataatgccgagcaggctgcccgcaccgcagtattacagggtagtaacggttgg
tttatctatgatagtcaggtgaccagtgccgccagaggcagtgttcgttggagaacgctg
ttagaacagatgttggataaaggtggtccggatatttattacaaaccggcagtaacggta
aaaggcgagttaaaccatcgggagatgctgcttcgtattcatgatggcaatgatgaacta
caacctgcggaatttatgccgttgatacaacagtttggtttaaccgaacgttttgaccga
ttagtattgagtaaaactctgcccttacttgatcgttggcctaatgacaccatcgccgta
tcggtcactgtcgactccctgcttaaacactcttttcaggtgtggctacgggataatctg
ttggaaaaagaaaaatcgtatcgaaagcgaattatatttgaacttgcagaggcagatgtt
tgtcaatatagcgatcgcttgcgtccggtgattcgattactgcatctgttagggtgccgt
ttgggaattgttcaggcgggattaacggtcgtcagcactatctatattaagaccatgccg
gttgaagtgataaaacttcatccgggtttggtgcgtaatatcgatcgacgtccggaaaat
cagctatttgtcgacagccttatcagcgcctgtgaaggaacaaatgtggtagtgatggct
gcgagtgtaagaacacatctcgaatgggaaaccctgtgttctcatgggattggtggtggt
cagggtgagttttttgcctcgccggtgttgattcctccccctaaagagaaaaatagtggt
aaaaatcgtcattattaa

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