Limnobaculum zhutongyuii: EKN56_16375
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Entry
EKN56_16375 CDS
T06157
Symbol
csrD
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
prag
Limnobaculum zhutongyuii
Brite
KEGG Orthology (KO) [BR:
prag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prag03019
]
EKN56_16375 (csrD)
Messenger RNA biogenesis [BR:
prag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
EKN56_16375 (csrD)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
RH1
Motif
Other DBs
NCBI-ProteinID:
QBH98826
UniProt:
A0A411WRP8
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Position
complement(3673148..3675085)
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AA seq
645 aa
AA seq
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MRFTARLSIFISLLVFLTMILALMTSMLSVYFVGEEKMEKHWYALTTTVDQALIYQSPGA
YDRWLPVVMYATGVRHLTIKDEKDKIIYTHSSDNRPGFWEKFHTLSETDLELPQHPGYRM
QILYVNPILSTLFSLPILLAIIAVIVFIGLIMFWWIHWLKQQFKGLLLLEERSQRILAGE
REGAEVSDEKEWPVNTSAAINRLLSELSNMSNERVRVDKLIRSFAAQDAQTGRNNRLFFD
NQLATQLEEPNAHGVVMMIRLPELELMASEHGKDAIDDLLYTLVNMLSTFIMRHPAALLA
RYFDNDFSVMLPHRSLKEADAIAAQLVNAVDMLPVSSGIEKESLIHIGICLYHMGQTPEQ
IMDNAEQAARTAVLQGSNGWFIYDSQVTSAARGSVRWRTLLEQMLDKGGPDIYYKPAVTV
KGELNHREMLLRIHDGNDELQPAEFMPLIQQFGLTERFDRLVLSKTLPLLDRWPNDTIAV
SVTVDSLLKHSFQVWLRDNLLEKEKSYRKRIIFELAEADVCQYSDRLRPVIRLLHLLGCR
LGIVQAGLTVVSTIYIKTMPVEVIKLHPGLVRNIDRRPENQLFVDSLISACEGTNVVVMA
ASVRTHLEWETLCSHGIGGGQGEFFASPVLIPPPKEKNSGKNRHY
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgagatttaccgccagattatctatttttatttctttattagtttttcttactatgatt
ttggcactgatgaccagtatgttaagtgtttattttgtgggtgaggaaaagatggagaag
cattggtatgcccttaccaccacggtggatcaggcgctgatttaccaatctccaggcgct
tatgatcgctggcttccggtggtcatgtatgccacaggcgtgcgccatctgacgattaaa
gacgaaaaagataaaatcatttatacccatagcagtgataatcgccccggtttctgggaa
aagtttcacacgcttagcgagaccgatctggagttaccccagcatcccggttatcgcatg
cagatcctctatgttaatccgattcttagcacactcttttcgttacccattttattagcc
attattgcggtgattgttttcattggtttgattatgttttggtggattcactggcttaag
cagcaatttaaaggattgctgctactggaagagcgttcccaacgtattttagccggtgag
cgagaaggtgccgaagtctcggatgaaaaagagtggccagtgaataccagtgccgctatc
aaccgactgttgtctgagttgagtaatatgagtaatgagcgggtcagggtggataaactg
attcggtcgttcgccgcgcaggatgcacaaaccgggcggaataaccgcctgttttttgat
aaccaactggcaacccagcttgaagagcctaatgctcatggcgtggtaatgatgattcgc
ctgcctgagcttgaattgatggcgagcgagcatggtaaagatgcgattgatgatttgctg
tatacactggtgaatatgttatcaacctttattatgcgccacccggcagcgttactggct
cgttattttgataatgattttagcgtcatgttgcctcaccgttcactaaaagaagctgat
gcgattgctgctcagctggtcaatgccgtggatatgctaccggtatcctctggtattgaa
aaagagtctctgattcatataggtatttgcctttatcatatgggacagacgccagagcaa
attatggataatgccgagcaggctgcccgcaccgcagtattacagggtagtaacggttgg
tttatctatgatagtcaggtgaccagtgccgccagaggcagtgttcgttggagaacgctg
ttagaacagatgttggataaaggtggtccggatatttattacaaaccggcagtaacggta
aaaggcgagttaaaccatcgggagatgctgcttcgtattcatgatggcaatgatgaacta
caacctgcggaatttatgccgttgatacaacagtttggtttaaccgaacgttttgaccga
ttagtattgagtaaaactctgcccttacttgatcgttggcctaatgacaccatcgccgta
tcggtcactgtcgactccctgcttaaacactcttttcaggtgtggctacgggataatctg
ttggaaaaagaaaaatcgtatcgaaagcgaattatatttgaacttgcagaggcagatgtt
tgtcaatatagcgatcgcttgcgtccggtgattcgattactgcatctgttagggtgccgt
ttgggaattgttcaggcgggattaacggtcgtcagcactatctatattaagaccatgccg
gttgaagtgataaaacttcatccgggtttggtgcgtaatatcgatcgacgtccggaaaat
cagctatttgtcgacagccttatcagcgcctgtgaaggaacaaatgtggtagtgatggct
gcgagtgtaagaacacatctcgaatgggaaaccctgtgttctcatgggattggtggtggt
cagggtgagttttttgcctcgccggtgttgattcctccccctaaagagaaaaatagtggt
aaaaatcgtcattattaa
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