Pieris rapae (cabbage white): 110991713
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Entry
110991713 CDS
T05162
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
prap
Pieris rapae (cabbage white)
Pathway
prap03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
prap00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110991713
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prap03021
]
110991713
03019 Messenger RNA biogenesis [BR:
prap03019
]
110991713
Transcription machinery [BR:
prap03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110991713
Messenger RNA biogenesis [BR:
prap03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
110991713
U7-dependent histone pre-mRNA processing factors
110991713
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SYMPK_PTA1_N
Symplekin_C
HEAT_MROH2B_C
Motif
Other DBs
NCBI-GeneID:
110991713
NCBI-ProteinID:
XP_022112871
LinkDB
All DBs
Position
6:9978264..9989988
Genome browser
AA seq
1090 aa
AA seq
DB search
MSKPITNINAEKQLIQWINEAGMSDGGKRAGFLRRIVEVLTHQLSAMIPMYMENVLSFVN
DKSTDIRKIVIGFIEELSTNFPYTLPKVISQLQLLVIDTVVAVQKRAIQAAGVIYKNVLT
WISKDESVAEMKHVWEHITKTKLQILNMIDSENEGIRTHAIKFLEEVVLLQTANNSSDFS
IDNIPNTLTFINHAALEEEAEHIFELLIKFHNSQHISSVNLMACMATLISLAKFRPKYLA
RVIHALGDLHTTLPPTLSQSQVNSVRKHLKIQLINLVKHTSSNEMIPALMQLLSDIGMTQ
QEINKVIPKEKRHKRVLALATDSKNGDSPAKKTRLDSPPNSQESDSNSNSRTGFDDDSIQ
TAKTNLVNEDSLFDGLNNLDNVLNLVMSTLLNNLPNEMPSNFINIYQPIPNAGTKTHIRS
LAKMMHSVVKGESEIPLPDPTIVTKIPLLSEDDEKITLKNAVAKLQETTKDRQVENAVSK
LMEEKRQEYLKEEERKAKEKEKQVLPQIPAVPKLKQKVKLLKLQEITRPIPKEIKERLML
QAVKRILNAEKEAAIGGAAQIRAKFITIFASSYTPEIRDLVLNYVLEDPINRIDLALAWL
YEEYAYMQGFNRHPVTLQKVNEKPDQNYNQLLCAMITQICERGDPLMENSKEVLLRRIYC
EAPVITPEALDYLKHLVVEEKSLLALELLEELCTMRPPRAHKYIPALVSQALNEVQEIRD
IAIKSTVKIFKNGSDAVKKVIEKHSLLYLGFIALDNPPTELMSSRHNIRVWSDDLYKICL
NLVMALFMENDDFIIDVARVYGCAGSEAKRCVLRAIEGPLRAVAASAPGTVPPAFQILLQ
DCPRGAETLLTRLVHILTDKAPPTPELVSRVRELYATRVSDVRFLIPILNGLSKREILAA
LPKLVKLNPNVVKEVFNKLLGLQNPNNEVLPVTPEELLVALHLIDPSKADLKFIIKATGL
CFAEKQIYTQDVVSAVLQRLAEEQDTPVLMMRSVLQALTLYPNLGPLALNILQLLIDREV
WTNKVAWEGWVKCCERLGTAATRVLAALPARALPSLPPHLARLLEPQDVAPKFPPQPVPN
PLEPLPPGME
NT seq
3273 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaccaatcactaatataaacgctgaaaaacagctaatacaatggataaacgag
gcagggatgtcagacggtggtaaaagggcaggttttttgcgaaggatcgtggaagtgctc
acgcatcagctctctgccatgatacctatgtatatggaaaatgtattaagttttgtaaat
gataagtctacagacatacgaaaaattgtaataggctttattgaagagttaagcacaaac
tttccttataccttgccaaaagtcatcagccaattgcaattattagttattgacactgtt
gtggctgtacagaagagagctatacaagctgccggtgtcatttacaaaaatgtactcaca
tggataagtaaggacgaaagtgtagcagaaatgaagcatgtttgggaacacataactaag
acaaagttacaaattctaaatatgatagatagtgaaaatgaaggtataagaacacatgca
atcaaatttctcgaggaggtagtgttattgcagactgctaacaatagctctgattttagt
attgataatataccaaatacattaacatttatcaaccatgcggctttagaagaagaagct
gaacatatatttgaattattgatcaaatttcacaattcccagcatatatcaagtgttaac
ttaatggcctgtatggctacacttatatcattggcaaagtttagaccaaaatatttagca
agagtaatccacgcattaggagatttacacacaacattgccccctacactatcacaatca
caagtcaattctgtgcgaaaacatcttaaaatccaattaataaatttagtaaagcataca
tcatcaaatgaaatgattccagcactaatgcaactgctctcagatattggaatgactcaa
caggagattaataaagtcataccaaaagaaaagagacataaacgtgtattggctttagca
accgattctaaaaatggtgattcaccagcaaaaaagactcgtctggattcacctccaaat
agccaagaaagcgatagcaatagtaacagccgaacgggatttgacgatgacagcattcaa
actgcgaaaaccaacctcgttaatgaagactcactcttcgatgggcttaataatttggac
aatgttttgaaccttgttatgtcaaccctccttaacaatttaccaaacgaaatgcctagc
aacttcatcaacatctaccaacctatacctaatgctggtacaaagacacatattcgtagc
ttagccaaaatgatgcactcagtcgtaaaaggtgaatcagaaattcccctacccgatcca
acgatagttacaaaaatacctttgctatctgaagatgatgaaaaaattactctgaagaac
gcagtggcgaaattacaagaaacaacaaaagatcgtcaagtcgaaaacgctgtctccaaa
cttatggaggaaaaacggcaggagtacttgaaagaagaagaaaggaaggcaaaagagaaa
gagaaacaggtgcttccacagataccggccgttccaaaattgaagcaaaaagtgaaatta
ctaaagctgcaggagataacacgaccgataccaaaagagatcaaagaacgattgatgctt
caggcggtgaaacgcattctgaacgcagaaaaagaagcagcgatcggcggcgctgcacaa
atccgagcgaagtttataacgattttcgcatcaagctatacaccagaaattcgggattta
gttctaaactacgtgttggaagatccaatcaaccgaatcgacttggctttagcctggttg
tatgaggaatacgcttatatgcagggcttcaatcgccacccagtgacgttacagaaggtt
aacgaaaagcccgaccagaattataaccaattgctttgcgcaatgatcactcagatctgt
gaaaggggagatccgttgatggagaatagcaaggaagtgttgttaaggaggatttattgt
gaggcgccagtaataactccggaagcgctggattatttgaagcatttggtggttgaagag
aaatcgttattagcgcttgaattgcttgaagagttgtgtacgatgcgaccgcctagagcg
cacaaatatattccagcgttagtttcgcaggcgttgaacgaagtccaggaaatccgcgac
atagcaataaaatcaacagttaaaatattcaaaaatggctcagatgcggtcaagaaagtg
atagaaaagcattctttgttatatttgggttttattgccctcgataacccacccacagaa
ttgatgagttctaggcataatatcagggtgtggtctgatgacttatacaagatatgcttg
aatttggtaatggctctatttatggaaaacgatgactttataatagacgtggctcgtgtc
tatggttgcgcgggttcggaggccaagcgttgtgttcttagggccattgagggtccatta
agggccgtagcggcatcggcccctgggacggtcccgccggcttttcaaatactcctacag
gattgtccacgtggggctgagacgcttttgacgagactggtccatatacttacagataaa
gcgcctccaaccccggaacttgtgtctcgtgttcgcgagctgtacgccactcgagtgtcg
gatgtccgtttcctgattcctatacttaacggattgtctaaacgggagatcctcgcagct
ctaccgaagcttgtcaaactgaacccaaatgtcgttaaggaagtgttcaacaaactactg
ggcttacagaatccaaataatgaagttttaccagttactcccgaggagcttctagtcgcc
ctgcacctgattgatccgagtaaggcagacctgaagtttatcatcaaggcgaccggactg
tgttttgccgaaaaacaaatttatacacaagacgtggtatcagcagttctacagcggctg
gcggaagagcaggacaccccagttctgatgatgaggagtgtcctccaggccctcacttta
taccccaaccttggaccactggccttgaatatactgcagctgcttattgatagagaggta
tggacgaacaaagtcgcgtgggagggttgggtgaagtgctgtgagcgattgggtactgcc
gcgacgcgggtgttagcagcattacctgcgcgtgcgctgccttccttaccgccgcatttg
gcgcgtctactcgaaccacaggatgtagcaccgaagtttccacctcagccagtgccgaat
cctttagaacctttgccgccagggatggaatga
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