Pieris rapae (cabbage white): 110992003
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Entry
110992003 CDS
T05162
Name
(RefSeq) probable cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
prap
Pieris rapae (cabbage white)
Pathway
prap03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
prap00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110992003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prap03019
]
110992003
Messenger RNA biogenesis [BR:
prap03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
110992003
U7-dependent histone pre-mRNA processing factors
110992003
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
SAP
Motif
Other DBs
NCBI-GeneID:
110992003
NCBI-ProteinID:
XP_022113311
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All DBs
Position
1:9708005..9718823
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AA seq
728 aa
AA seq
DB search
MTSIIKLHCLSGAGDESPPCYVLQIDEFKFLLDCGWDEKFDTDLIKELKRHVNSIDAVLL
SHSDPLHLGALPYAVGQLGLNCPIYATLPVYKMGQMFMYDLYQSHKNMTDFDLFTLDDVD
TAFDRITQLKYNQSIDMKGKGLGLRITPLPAGHLLGGTIWRIAAPGEEDIVYAPDFNHKK
ERHLNGCEIEKIMRPSLLLLGAMNADYVQQRRRLRDEKLMTTILTTLRGGGSVLVCTDTA
GRVLELAHMLDQLWRNKDSGLVAYSLLLLSNVSYNVVEFAKSQIEWMSDKLTRAFEGARS
NPFALRHLHLCHSVAEVTRTPGPKVVLASCPDLESGFARDLFILWAQQSQNSIVLTARTS
PGTLARDLIDKGGDRTIEMTVRRRVRLEGAELEEFMQQQRTKVKDPVKEEVDGLSSDSES
DGELEMWVVTGRHDIPVRAEYRAGGCFKSNKKHHAMYPCHEDRTRADDYGEIIRPEDYRL
AEIVDAEGEIRDVPPAPPQKPEPEEEIIEIPSKCMASVRQIAIKASIQYIELEGRCDGES
LLRVVAHAKPRAIVALRAGTNAVNTLRKHCENEGIEKIYTPGKGDVVDATTESHIYQVKL
TDSLMCGMSWRTAGDAELAWLTATVAEPRAREPNSEESVLDDMIALEACEGNTLGHAAAF
INSLKLSELRSALAKHGLNAEFNAGALECCNGTIAIRRMENGRIALEGVLSEEYYKVREL
LYDQFAIV
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgacctccattataaaattacactgcctctctggagctggggacgaatctccgccttgt
tatgtgttgcaaatagatgaatttaaattccttttagattgtggctgggacgagaaattc
gatacagaccttattaaagaattaaaaaggcatgtaaacagtatagatgcagtactttta
tctcattctgacccgttacacttaggagcacttccatatgcggttggacaattgggtctt
aattgtccaatatatgccacattacctgtctacaaaatgggccaaatgtttatgtatgat
ttatatcagtcacataaaaatatgacagattttgacctgtttactttagatgatgttgat
actgcatttgatagaataacccaattgaaatataatcagagtattgatatgaagggcaaa
ggtttaggactccgtataacaccattgccagcaggacatcttcttggtgggacaatatgg
cgtatagccgccccaggtgaagaggatattgtttatgcaccagactttaaccataaaaag
gagaggcatcttaatgggtgtgaaattgaaaagattatgagaccatcactgttactattg
ggagctatgaatgcagattatgtgcagcagaggagaaggttgagggatgaaaagcttatg
acaacaatactaacaactttacggggtggtggatctgtgctagtttgcacagacacagca
gggcgagtcttagagttagctcacatgctggatcagctttggcgaaataaagactcaggg
cttgtggcatattcactgttactcttgtcaaatgtcagttacaatgtggtggagtttgct
aagtcgcagatagaatggatgagtgacaaattaactcgtgcttttgaaggtgcccgaagt
aatccttttgctctacgacacctgcatttatgtcactctgtggctgaggttactaggaca
cctggacctaaggtggtgttggcttcctgcccagacttagaatcaggattcgccagagat
ctcttcattttatgggctcaacaatcacaaaattctattgtattgacggccagaacatca
ccaggtacgcttgcccgagacctcatagacaagggcggcgaccgtaccatagagatgaca
gtacgccgtcgagtacggctagagggagcagaactagaagagtttatgcaacagcaacgg
actaaagtcaaggatcctgtgaaagaagaagtggacggcctatcatcagattcagagtcg
gatggtgaattggagatgtgggtggtgacggggcgccatgacatcccggtccgcgccgag
tatagggccggcggctgcttcaagtccaacaaaaaacaccacgccatgtacccctgtcac
gaggaccgcaccagggcggatgactatggcgaaattattcgacctgaagactacagatta
gcagaaatagttgatgctgaaggggaaatacgagacgtacctcccgccccaccgcagaaa
cctgagcctgaagaggaaataatagaaataccgagcaaatgtatggcctcggtgcgacag
atagcgattaaagctagtattcaatacatagagttggaagggaggtgcgacggtgagtcc
ctacttcgagtggtggcacatgcaaagcccagggctatagtggcgttgcgggctggaact
aatgctgttaacacgctcagaaaacattgtgagaatgaaggtatagaaaagatatacacc
cctggaaagggcgacgtagtggatgccaccactgaatcgcatatttaccaggtgaaactg
acagacagtctgatgtgcggtatgtcttggcgcacagctggagatgcggagctggcctgg
ctgacagctactgtcgccgaacctcgcgctagggagcctaatagtgaagaatcagttctt
gatgacatgatagcactagaggcctgtgagggcaacacgctgggtcacgcggcggcattc
atcaactctttgaagctttccgagctgagaagcgctctcgccaagcatggtcttaacgct
gaatttaacgcaggagcgctggaatgctgtaatggaactatcgctattcggaggatggag
aacggtcgaattgcattggaaggagttttatcggaagaatattacaaagtaagggagctg
ctctatgaccagttcgccattgtttaa
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