Pieris rapae (cabbage white): 110993015
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Entry
110993015 CDS
T05162
Name
(RefSeq) probable DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
prap
Pieris rapae (cabbage white)
Pathway
prap03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
prap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
110993015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prap03400
]
110993015
DNA repair and recombination proteins [BR:
prap03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
110993015
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
Motif
Other DBs
NCBI-GeneID:
110993015
NCBI-ProteinID:
XP_045487190
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Position
14:5559582..5574995
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AA seq
1141 aa
AA seq
DB search
MTDVLIFRESQPTFYTQIILIVISLVSILLIHIKMSKRNSVGATTNNTLFNYFTKTPPST
KKVKLSVTNEIKTSTETVQTSENKKRERQTSPSPRKDNNNHTDDESPIAPKKRKRIRLNP
CDTDDSDTENKEDNNIKSKKNASLGKKLQESFQYDPSDTPKSKTKKIPVAIQVKTESQES
PVIAEEGDWVHCKLDWLKPEKIKDAKGRRPDHPEYESTTLYVPKEFMKTQTPAHRQWWEL
KSAHYDCVLFFKVGKFYELYHMDAAVGVNELGFSYMKGEFAHSGFPESAYARMSSTLVSK
GYKVARVEQTETPEMMQDRCKREQKTSKYDKVVRREICQVSLRGAQVCGLQDNGPSESNS
PFMMAVAEEENNGISTYGVCFVDTSIGQFHIGQFKDDKHSSRLLTTLAHFPPALIISDRK
SCTTRTSKLLSTHCHSARRETLNMAPPEKTLKLLAEKYYRTNENGQWPEGILQFLHEGDV
LGLTPAANSSLAIKALGGCVAFLTECLLDIQILGMSQFSEYTPPDVLNMTLQNEKTQWTG
GSTMVLDAITLRNLRVVQDEGCLYDKLNLCSTPMGKRLLYQWVCSPSCDLTVIKERQEAV
KTLFENQDICQEVKNLLTTLPDLERLLAKVHALGNLKKSKDHPDSRAILYEEKTYSKRKV
LDFISVLNGYTAALKLAELFCDTDSVLLKRITQLSPEGKFPDYRETLKFFKEGFNQTQAE
KEGKILPEAGVDQEYDNTLELIEEIEQELKNYLVEQEKYFKCRITYVGSDKKRYQMEIPQ
NAASKAGGDYHMEGARKGFKRYSTAETKDFLARMMAAEEQKRVVLKDLSRRIFEKFSSHY
SQWAAAAQCVATLDVLLSLCEFATQQTSDICLPEVTFGDTQPYISIVEGRHPCIPIVNDF
IPNDTSLGEKGASLLLLTGPNMGGKSTLMRQVGLLTVLAHLGSYFPAQECKLSLVDRIFT
RLGASDDILSGHSTFLVEMNETAAIIKHASLHSLVLLDELGRGTSTYDGTAIASGVCVEL
AERGCRVLFSTHYHTLVTHLATHPNVQLGHMACMVETEETETDDIPEETITFLYKLSPGA
CPKSYGFNAAKLAGIPQEITRRARNISKKLEAEANLIRAFKDIMKIGQVSNMRKILAELT
I
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatgttttgatttttcgtgaatcgcaaccaacattttatacacaaataatctta
attgttatttctctggtctctattttacttattcatataaaaatgtctaagcgaaatagc
gtcggcgctactactaataatactctttttaattattttaccaaaactccgcctagtacg
aagaaagtgaaacttagtgtaactaatgaaataaaaacttctacagaaactgtacagact
tcagaaaacaaaaagagagaacggcaaacctcaccctctccaagaaaagacaataataat
cacacagatgatgaatctccaattgcaccaaagaaaagaaaaagaatccgtcttaatcct
tgtgataccgatgattctgatactgaaaacaaagaagataataacataaaatcaaagaaa
aatgcttcactaggaaaaaaattgcaggaaagttttcaatatgacccttctgatacacca
aaaagtaaaactaagaagatcccagttgcaattcaagttaaaactgagtctcaagaatca
ccagttattgctgaggaaggtgattgggttcattgcaaactagactggctcaagccagag
aaaatcaaggatgccaagggacgtaggccagaccatccagaatatgaatcaaccacactt
tatgtacctaaggaatttatgaagactcagactccggctcatagacagtggtgggagtta
aaatcagcgcactatgattgtgtacttttcttcaaagtgggaaagttctatgagttgtat
catatggatgccgctgtgggtgtcaatgaactaggattctcttacatgaagggtgaattt
gcccattcggggtttcctgaaagtgcatacgcgcgaatgtcttcaactttagtgtctaag
ggatataaagtagctcgagttgaacaaacagagacccctgaaatgatgcaggatagatgt
aaacgagaacaaaaaacaagtaagtatgacaaagtggttcgtcgtgagatttgtcaagtg
tctctgcgaggggcacaagtttgcggccttcaagacaatggtccttcggagtcgaactca
ccgtttatgatggctgtcgctgaagaggaaaacaatggaataagtacatacggtgtatgt
tttgttgatacgtctattggtcaattccacatcggtcagtttaaagacgataaacactct
tcgaggctgctcacaacccttgcgcattttccacctgctttgattatctccgatcgcaag
tcatgcacaacacgaacaagtaaacttctgtccacacattgtcatagtgcgagaagggag
acgttaaatatggcgccaccagagaaaacgctgaaattgttggccgaaaaatattacagg
acgaatgaaaatggtcagtggccggaggggatcttgcagtttttacatgaaggtgacgtt
ttgggtctaacgccggctgcgaatagtagtttagcaattaaggctctgggaggctgtgta
gcgtttctcacggaatgtttgcttgatatacaaattttaggtatgtctcaattctctgaa
tatacaccccctgatgtgcttaatatgactttgcaaaatgagaagactcaatggactggt
ggtagtacaatggtcttggatgcaattacgttgagaaatcttcgtgtagtacaggatgag
ggatgtctctatgataaattaaatttatgctctacccccatgggaaaaagattactatat
caatgggtatgttctccgagctgtgatttgacagtgatcaaggaacgccaggaagctgtc
aaaactctatttgaaaatcaagacatctgtcaagaggtcaagaacttgctgacaacgttg
ccagatctggaacgacttttggctaaagtccatgccctcgggaatttaaagaaatcaaaa
gaccatccggattcgagagcaattttatatgaagagaagacttattccaaaagaaaagta
ctggattttatttcggtactcaatgggtatacagctgcgttgaagcttgcagaattattc
tgcgacaccgactctgtcttattgaagaggatcacccagctatcaccggaagggaagttt
cctgattatagagagactttgaaattctttaaggaaggcttcaatcaaactcaagcggag
aaggaaggaaaaattttgccggaagctggtgtggaccaagagtatgacaacaccttggag
cttatcgaagaaattgagcaggagcttaagaattacttggtggaacaggagaaatacttc
aagtgcaggataacatatgtgggtagtgataaaaagaggtaccaaatggaaattccgcaa
aatgccgcatccaaagcaggaggagattatcatatggaaggcgccaggaagggatttaag
agatattctactgctgagacaaaggacttcctcgcacgcatgatggcggctgaagagcaa
aaacgcgtagtactaaaggatctcagtcgtagaatatttgagaaattctctagtcattat
tcccaatgggccgctgccgcacagtgtgttgcgacgttggatgtgttactgtccctttgc
gaattcgctacacaacagacgagcgatatttgtttgcctgaggttacatttggcgataca
cagccctacataagcatagtagaaggccgtcacccctgcataccaattgtgaatgatttc
atcccaaacgatacatcccttggggagaaaggagccagtttgttattactaacgggacct
aatatgggcgggaagtccactctaatgagacaagtcggattattaactgtccttgcgcat
ttgggaagctacttcccggcccaggaatgcaagctcagtttagtggatcgcatcttcacc
cgtttaggggcttctgatgatattctgtccggtcattccacattccttgtggagatgaat
gagacggcggccattattaaacacgcctcgcttcattcccttgtgttgttggatgaatta
ggtcgcgggacaagtacatacgacggtacggccatagcaagtggagtgtgtgtggaattg
gcagagcgtggatgtagagtgttgttctccacacattatcacacactcgtcacacacctc
gcgacacaccctaatgtgcaactggggcatatggcatgtatggtagaaacggaggaaacg
gaaactgatgatatcccagaagaaacaataacctttttatacaaactgagccctggtgct
tgtccaaaatcctatgggtttaatgccgcaaaattagcagggatcccgcaagaaataacg
cgtcgagcgcgtaatatatcgaaaaaactcgaagccgaagctaatctaataagggctttc
aaagatataatgaagattggtcaagtatcaaatatgaggaaaattcttgcggaattgaca
atttaa
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