Pieris rapae (cabbage white): 110994659
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Entry
110994659 CDS
T05162
Name
(RefSeq) collagen alpha-1(III) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
prap
Pieris rapae (cabbage white)
Pathway
prap04382
Cornified envelope formation
prap04512
ECM-receptor interaction
prap04518
Integrin signaling
prap04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
prap00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
110994659
04518 Integrin signaling
110994659
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
110994659
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
110994659
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
prap04147
]
110994659
00536 Glycosaminoglycan binding proteins [BR:
prap00536
]
110994659
Exosome [BR:
prap04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
110994659
Glycosaminoglycan binding proteins [BR:
prap00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110994659
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
110994659
NCBI-ProteinID:
XP_045486278
LinkDB
All DBs
Position
12:3095183..3129262
Genome browser
AA seq
1848 aa
AA seq
DB search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NT seq
5547 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgggaattttattttttattttggcgtcgctagcgtttacacatgccagcgaa
gatgtaccaaagaataacccaaaagatattataaatgacgaagttcgtgcagccagggac
tacaacggaaatgacaatgaattagtggttgacatcgaagacgatgagaagaaacagtat
tacgaaactaattacgatacaagtgcgtatggatttggatacgacgtcggccctaatggt
cagtttcaccacgaaaaccgtggaccagatggtgtcacctacggttgctatggttacgta
gacccggacggctaccttcgagccacacactatgtagctgatagtcacgggtacagagta
gtagagccagagaagccagttgaagtttatccagacactaaccatgtatacgatgagaat
tctgacaatgcatcggaaatacctggacaaattattccttgggacaaattgtacttccct
aagggatgtggaaggaccccaggtggtgttccacccaagccccgacccaagccaaccccg
cgacccccgaaacccccaacagacagtactggacaaaacagcaatcccaaccctggagtg
atttaccctggaggtccaggatactatcccggtacttcaggaacccccggctccccaggc
ttccccggatctccaggcactccaggaggacctggtggaccaggaggagcgggaggcggt
tattaccccggatcaggtgctggcggaccaggtggaccaaatgggcctaacggaccaagt
ggcccaggggggccgaatggaccaaacggtcctagcggtccgggtggacctaatggccct
ggaggaccaaacggccccaatggaccgggtggaccgggaggatcaggaggcggttattac
cccggatcaagtggaccatcaggtccaactggtggaggtggctactacccaggatcacaa
gatggtggatattatccaggacaaccaggctcgcctggctatccaggatctccaggcagt
ccaggtgggccaggtggaccaggtggacccggtggaccaggtggaccaagtggacccgat
agcggttattacccaggtggtcaagacggtggttatcatccaagacccagcggaccaaat
ggaccagcaggtggtggctattacccaggacaaccaggaagtccaggcttaccgggttca
ccgggatacccgggtgggcccggcggaccaggaggaccaggcggcccaggaggaccagga
tcgagtagccccggtcagggtggctaccgtccaggtcaaggaccaaatggtggaggctac
ctgccaggacagtcgggtaaaccaagcggacaagacggaacaggaggacccagtggccca
agtggcccaccaggcagctattatccaggatctccaggaagtccgggcttacccggctcg
ccaggatatccaggtggtcctggtggtcctgggggaccaggtggccctggtggaccaggg
ggaccaagtggcccaggggggccaagtggaggaagctacttgccaggacaatcaggcggt
caaaatggaccaggaggtcccaacggacaaggaggctctggtggacctaacgggccagca
ggaggaggctattatccaggtcaatctggaggtccaggtttaccaggctcaccaggatat
cctggtggtcccggaggccctgggggaccaggtggcccaggtggaccagggggaccaagt
ggaccaggaggaccaagtggaggaggctacttgccaggacaatcaggcgaccaaaatgga
cctgggggtcccaacggacaaggaggctccggcggcccaagcgggccaataggaggcgac
tattatccaggtcaacctggaagtccaggtttaccaggttcaccaggttatccaggtgga
ccagggggaccgggtggaccaggtggaccaggcggacctgggggaccaagtagtggttat
aaccccgattcacaaggtcaacaaggccagccaggacaaccaggctatccgggacaacca
ggccagccaggcaagccgggacaaccaggctatccaggacaaccaggaacacaaggccaa
ccaggacaaccaggaacaccaggctacccaggacaaccgggtcaaccgggcaccccaggc
caaccaggacaaccaggaacaccaggccaaccaggacaaccaggctatcctggccagcca
ggacaaccaggctacccaggacagccaggcaaccaagggcaaccaggaacaccaggatac
ccaagtcgaccaggaggtccaggccaacaaggccaaccaggtcgacctggtaaaccaggc
tacccaggacaaccgggatatccaggacagccaggccaacccggacaaccaggatatcca
ggacagccaggtcaaccaggctatccaggccaaccaggcaccccagaaaaaccaggccaa
ccaggctatccaggagaaccaggccaaccaggctatccaggccaaccaggaaagccaggc
caacccggacaaccaggaacaccaggccaaccaggcaccccaggcaaaccaggccaacca
ggaacaccaggtcagcccggatatccgggacaaccaggccaacaaggccaaccaggaggt
ccaggccaacccggacaaccaggatatccaggacagccaggccaacccgggcaaccagga
tatccaggacagccaggccaaccaggctatccaggtcaaccaggccatcaaggccaacca
ggctatccaggacaaccagggcaacccggacaaccaggtcatccaggaaaacccggacaa
ccaggaacaccaggccaaccaggcaccccaggcaaaccaggccaaccaggaaaaccaggt
cagcccggatatccgggacaaccaggccaacaaggccaaccaggaggtccaggccaacca
ggaggtctaggccaacccggacaaccaggatatccaggacaaccaggccaacccggacaa
ccaggcaccccaggcaaaccaggccaaccaggaacaccaggtcagcctggatatccggga
caaccaggccaacaaggccaaccaggccacccaggacaaccaggccaacccggacaacca
ggatatccaggacagccaggcgaaccaggctatccaggccaacccggacaaccaggaaca
ccaggccaaccaggcaccccaggacaaccaggccaaccaggaataccaggtcagcccgga
tatccgggacaaccagaccaacaaggccaaccaggaggtccaggccaacccggtgaaccc
ggctatccaggacaaccaggccaacctggacaaccaggatatccaggacagccaggccaa
ccaggctatccaggccaaccaggcaccccaggacaacccggacaaccaggatatccagga
cagccaggccaaccaggctatccaggacaaccagggcaacccggacaaccaggccatcca
ggcaagccaggccaacccggacaaccaggctatccaggagaaccaggacaaccaggctat
ccaggccaaccaggccatcaaggccaaccaggctatccaggacaaccagggcaacccgga
caaccaggtcatccaggcaaaccaggccaacccggacaaccaggacatccaggccaacag
ggccagccaggaggtccaggtcaacccggcacacccggccagccagctcaaccaggtggt
ccaggacaaccaggtcaacaaggccagccaggacaaccaggctatccgggacaaccaggc
cagccaggcaagccgggacaaccaggctatccaggacaaccaggaacacaaggccaacca
ggacaaccaggaacaccaggctacccaggacaaccgggtcaaccgggcaccccaggccaa
ccaggacaaccaggccaaccaggacaaccaggctatccaggcaagccaggaacacaaggc
caaccaggccaaccaggaacaccaggctacccaggacaaccgggtcaaccaggcacccca
ggccaaccaggacaaccaggaacaccaggccaaccaggacaaccaggctatccaggccag
ccaggacaaccaggctacccaggacagccaggcaccccaggacaaccaggaacaccagga
tacccaagtcaaccaggaggtccaggccaacaaggccaaccaggtcaacctggtaaaccg
ggctacccaggacaaccgggtcaaccgggcaccccaggccagccaggaaaaccaggacaa
ccaggaacaccaggccaaccaggacaaccaggctatccaggccagccaggacaaccaggc
tacccaggacagccaggcaccccaggacaaccaggaacaccaggatacccaagtcaacca
ggaggtccaggccaacaaggccaaacaggtcaacctggtaaaccaggctacccaggacaa
ccgggtcaaccgggcaccccaggccagccaggacaaccaggaacaccaggccaaccagga
caaccaggctatccaggccagccaggacaaccaggcttcccaggacagccaggcacccca
ggacaaccaggaacaccaggccaaccaggacaaccaggaacaccaggccaaccaggacaa
gcaggaacaccaggatacccaagtcaaccaggaggtccaggccaacaaggccaaccaggt
caacctggtaaaccaggctacccaggacaacccggtgaacccggctatccaggacaaccg
ggtcaaccaggcacccaaggccagccaggtgagccaggacaaccaggctatccaggacaa
ccaggctatccaggacaaccaggccagccaggacaaccaggcacacccggccagccagga
caaccaggaacaccaggccaacaaggccaacccggacaaccagggcaacatgggcaacca
ggacaaccaggcagcccaagtgggcaaggacagcccggccagcaacagccaggaaagcca
ggcggtggtgattcggttggtgaatcaactggaactggtgtgcaacccccagtttatcca
ccggggcaaatgcctccgttcccaatgtacgtcataccctatcctttgcccatcgtgcca
tatccaggttcatgtccgtgctacctcttgaatccaggaaataacagcagcagtacagct
gtcacccaggcgcccacacaaagcccacccccatactattcaccctatggaataattggc
tttcttcctgtggtcttcgtcccgagctgccccggtaatgtaactgatatgcaaactgca
caacagaatttccccggagctgtgccagtaccatacaattgcgcccagtgtcaggcaagc
cgagatatatatagatatttcggaagagttggtggcgctcgaagcgtagatttcaatgac
cttaaagaaataacttccctgccagagttggaaagtttattgaaaaatgaaattaaggtg
ccgagaaaaagtctgcgaaaaattaaggtacacgctcgcgttttagacgaaaagaaagac
gaaaagaaaactgtatcgaaagagtaa
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