Pieris rapae (cabbage white): 110995530
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Entry
110995530 CDS
T05162
Name
(RefSeq) cleavage and polyadenylation specificity factor 73
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
prap
Pieris rapae (cabbage white)
Pathway
prap03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
prap00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110995530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prap03021
]
110995530
03019 Messenger RNA biogenesis [BR:
prap03019
]
110995530
Transcription machinery [BR:
prap03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110995530
Messenger RNA biogenesis [BR:
prap03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
110995530
U7-dependent histone pre-mRNA processing factors
110995530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Gp58
DUF5588
Motif
Other DBs
NCBI-GeneID:
110995530
NCBI-ProteinID:
XP_045486762
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All DBs
Position
13:8597856..8612248
Genome browser
AA seq
685 aa
AA seq
DB search
MTTNPRKGVDAVPYEESDQLTIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDA
LPFVDLIEADEVDLLLISHFHLDHSGALPWFLTKTSFKGRVFMTHATKAIYRWLVSDYIK
VSNISTEQMLYTESDLEGSMDRIETINFHEEKDVRGVRFWAYNAGHVLGAAMFMIEIAGV
KVLYTGDFSRQEDRHLMAAEIPTVHPDVLITESTYGTHIHEKREERESRFTSLVSDIVMR
GGRCLIPVFALGRAQELLLILDEYWSLHPELQDIPIYYASSLAKKCMAVYQTYINAMNDR
IRRQIAVNNPFIFRHISNLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESWCTDPKNGV
IIAGYCVEGTLAKTILSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFINILKPP
HVVLVHGEQNEMSRLKAALQREHRSRLAVHTPRNTQLLALTFRGDKTAKVMGSLAVEPPQ
PGDTLQGVLVKRNFNYHILAPSDLNKYTELSQSEVVQRQSIHYTGSNAVLRHAVLRLAGT
VEFLSETRWRLYGCLDMIIEPPVITLEWQAQPVSDMYADAVVAALLAAASMPQPTHLPLA
PKLDRMHFKECVIEMLQEMFGEDSVPKMFKGEKLHVEVNGKRADIDLLALDVTSNDEALE
RMVQSAISKLYAALAPVKPPPPPTC
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgacaactaatccacggaaaggcgttgatgctgtaccatatgaagaaagtgatcaacta
actattcgacccttaggtgctgggcaagaagtagggcgatcatgcataatgttggaattt
aaagggaagaaaataatgctggactgtggcattcacccaggcttatcaggaatggatgca
ttgccatttgtagatcttattgaagctgatgaagtggatttactgctcatatctcacttt
catcttgaccatagtggagcattaccttggtttctgacaaaaacatcatttaaaggaaga
gtttttatgacacatgcaactaaagctatttacagatggcttgtatcagattatattaaa
gttagcaacatatcaacagagcagatgttgtacacagagtctgatttagaaggatccatg
gatcgtatagaaacaatcaactttcatgaggaaaaagatgtgcgaggagtgaggttctgg
gcatacaatgctgggcatgtgcttggagctgcaatgtttatgattgaaattgctggtgtt
aaggttttatatacaggagatttttcaagacaagaagacagacatttaatggcagctgaa
atacccactgtacatcctgatgtattgataacagaatccacatacggaacacatatacac
gaaaaacgcgaggagcgagagagtcgtttcacaagtcttgtgagtgatatagtgatgcgt
ggtgggcgttgcctcataccagtctttgctttgggacgcgcacaggaacttttacttata
ctggatgaatactggtctcttcaccccgagctgcaagacattcctatatactacgcttcg
tcactcgcgaagaaatgtatggccgtgtaccagacttacatcaacgctatgaacgaccgc
atccgaagacagatagcggtcaataatccgtttatcttcagacatatctctaatttgaag
ggaatagaccatttcgaggatataggaccctgtgtgataatggcgtctccgggaatgatg
cagtctggactctcccgggaactcttcgagtcgtggtgtactgatcctaagaacggtgtt
attatagctggttactgtgtggaaggaactttggctaagacaattctatcggagcctgaa
gagatcacgacgatgtcaggccaaaagctgcctttgaagatgtcagtggattacatctct
ttctcagcgcacacagactaccagcaaacgtcagaattcatcaatatattgaaaccaccg
catgtggtgttggtgcatggagaacagaacgagatgtctcggctgaaggcagcgctgcag
cgggaacatagatcgaggctggccgttcatacgccgaggaacacacaactactggccctc
actttcagaggggataaaactgcaaaggtaatgggttcgctagccgtagagcctccacag
cccggggacacattacagggtgttctcgttaaaaggaattttaattaccatatattagca
ccttcagatcttaataaatacacagaattaagtcaatcagaggttgtccaacggcaatcc
atccattacacgggctccaatgccgtgctgcgtcacgccgtgcttcgtttggccgggacc
gtggagttcctcagcgagacgaggtggaggctctatgggtgcctcgacatgatcatagaa
ccgcctgttatcacgctagagtggcaagcgcagccggtgtcagacatgtacgcggatgcg
gtggtagcggccttactggccgcggcctccatgccccaacccacgcatctgcctctcgcg
cccaaattggaccggatgcactttaaggagtgcgtcatagagatgcttcaagaaatgttc
ggagaggactcagtgccgaagatgtttaagggcgagaagttacacgtggaggtgaacggc
aagagagcggatattgatcttctggccttggatgtaacaagcaatgatgaagcgttagag
cggatggttcagtcggccatttcaaaattgtacgcagcgttggcacccgttaaaccaccc
ccaccacctacttgctga
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