KEGG   Pieris rapae (cabbage white): 110996386
Entry
110996386         CDS       T05162                                 
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
prap  Pieris rapae (cabbage white)
Pathway
prap03030  DNA replication
prap03410  Base excision repair
prap03420  Nucleotide excision repair
prap03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:prap00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    110996386
   03410 Base excision repair
    110996386
   03420 Nucleotide excision repair
    110996386
   03430 Mismatch repair
    110996386
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:prap03032]
    110996386
   03400 DNA repair and recombination proteins [BR:prap03400]
    110996386
Enzymes [BR:prap01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     110996386
    6.5.1.6  DNA ligase (ATP or NAD+)
     110996386
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     110996386
DNA replication proteins [BR:prap03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    110996386
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     110996386
DNA repair and recombination proteins [BR:prap03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     110996386
   NER (nucleotide excision repair)
    Other NER factors
     110996386
   MMR (mismatch excision repair)
    Other MMR factors
     110996386
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-GeneID: 110996386
NCBI-ProteinID: XP_022119718
LinkDB
Position
5:complement(1906964..1918554)
AA seq 897 aa
MNRYNLLKISRVVNHLNRSLYCNYSRTFHRLPVCFKSTFFLRNMSQSSIRSFFTVTPKKP
AEVETEEQKNKSFESDKVSPPSNGKDKITKRSRSTSTEDEINSNCASPELSEKKKPKRRR
IVSSESESDSKSDQEIKLDKTRQPKTYDSPKTKKINKIKTEKLSPVNKKSKEKSENPSAK
KDSPKVKKETVTSPRNKKEEIKSPPDKKKIASLFAKKTDLEVEDKENSTVEKEKTAEVDY
NPAKPKYHPIKDACWNKGQEVPYLALAKTLENIEATSARLKMIDILSNYLRSVMLLTPED
LLPSIYLCLNQLAPAYHSLELGMAETYIMKAIGQCTGRTLAQVKSAARTTGDLGLVAEQA
RATQRTMFPPPPLTLRKVFAALKEVAQATGQASVNKKIGKIQSLYVACRHSEARYLIRSL
EGKLRIGLAEQSVLQAIACACAASPTAGPLAGTVDVSADMSQEKFKARVDEFSLIIKTTY
CECPNYDSIVDVLLKYGVEALPEHCRLTPGVPLKPMLAHPSRGVADLFTRFDGERFTCEW
KYDGERAQIHVPGTESPDLTKASIFSRNQEDNTSKYPDILSRLPKLLKRSVQSCVLDCEA
VAYDTANKQILPFQILSTRKRKDAQASEIKVQVCVFVFDLLYLNGSPLVRESLERRRALL
KENFNEIEGEWEFARGRDCSSPEEVEGELAEALRGSCEGLMVKALDGDKARYDIARRSHN
WLKLKKDYLEGCGDSIDAVVVGGYHGKGKRAGHYGGFLLACYDPEMDAYQTLCKIGTGFS
DEDLRTFSETLKAHVIDAPKSYYSYENSMNPDVWFEAACVWEVRCADLSLSPAHRAALGL
VDRDKGISLRFPRFIRCRDDKRPEQATSARQVADMYLAQDQVKNTAGNKTAQEDDFY
NT seq 2694 nt   +upstreamnt  +downstreamnt
atgaatcggtataaccttttaaagattagtagagtagtaaatcatcttaatcgctcgcta
tattgtaattattccaggacctttcacaggttacctgtttgttttaaaagtacatttttc
ctacgaaatatgtcgcaatctagcattcgatctttctttactgtaactcccaaaaagcca
gcagaagtcgaaacggaagaacaaaaaaataagtcttttgaaagtgataaagtctctcca
ccaagtaatggaaaagataagataacaaagagatcaagatctacaagtactgaagacgag
attaatagtaattgtgcatcaccagagttatctgaaaagaaaaaaccaaaacgcaggcgc
attgttagttcagaaagtgagtcagattcaaaatcagaccaagaaataaaattagataaa
accaggcagcctaaaacatatgactctcccaagacaaagaaaatcaacaaaatcaaaact
gaaaaattaagtccagtaaataaaaaatccaaagaaaaatcagagaatccttctgctaaa
aaagacagccctaaagttaagaaagagactgttacgtcaccaagaaataaaaaagaagaa
ataaaatcacctccagataaaaaaaagatagcatcactttttgcaaagaagactgacctc
gaagtggaagataaagaaaatagtacagttgaaaaagaaaaaactgcagaagtggattac
aacccagcaaagccaaaataccatcccattaaggatgcatgttggaacaaaggtcaagag
gtcccatacttagcattagccaaaacattggaaaatattgaagccacatcggctagactg
aaaatgatagatattctgagcaattacttaagatctgtgatgctgctcacacctgaggat
ctgctacccagcatctatttgtgcctcaatcagttggcacccgcatatcacagtttggaa
cttggtatggctgagacgtatataatgaaagcaataggccaatgtactggtcgtacgcta
gcccaagtaaagagtgcagcacgcactactggagacctgggactagtggcggaacaggct
agagccactcaacgcaccatgttccctccaccgcccctaacgttgaggaaggtcttcgct
gccttaaaagaagttgctcaagccactggtcaggcgtctgtaaacaaaaagataggcaaa
atacaatcactgtacgtcgcctgccgacattctgaagcgcgatatttaatcagatctctg
gaaggtaagttacgtataggtctggctgagcaatcagtgcttcaggctatcgcttgcgca
tgcgctgcgtcgcctacagccggtcctctcgctggcactgtagacgtcagtgcagatatg
agtcaggagaaatttaaggcgcgcgtagatgaattctcactaataataaaaacgacatac
tgcgagtgccccaactacgattcaatagtagatgtattactcaagtatggggtggaggct
ttgcccgaacactgcaggttgaccccaggggtcccactcaaacctatgctggcgcatcct
tcgagaggagtagctgatctttttaccaggttcgatggtgagcgattcacatgcgaatgg
aagtatgatggcgaacgagcgcaaattcacgtccctgggacggagtcacctgacctcaca
aaggcgtccatctttagtaggaatcaggaggacaatacaagtaaatacccagatatcctg
agccgtttgcccaaactgctgaagagatcggtgcaaagttgtgttttggactgtgaggct
gtcgcttatgacaccgcaaataaacagattttacccttccagatcctgtcaacgcgcaaa
cgcaaagatgcgcaggcgtcggaaatcaaggtccaagtgtgcgtgttcgtctttgacttg
ctttatctgaacggatcgcctcttgttcgggaatctttggagagacgtcgagctcttttg
aaggaaaactttaatgaaattgaaggtgaatgggaattcgcacggggtcgagattgtagt
agccctgaggaagtggaaggtgagctggctgaagccttgcgaggaagctgtgagggtctc
atggtgaaggcgttggatggagacaaggcgagatatgatatcgcccgacgttcgcataat
tggcttaagcttaaaaaggactatctagaaggttgtggagacagcatagatgcagtggtg
gtgggcggataccacgggaagggcaaacgagcagggcattacggtggattcttgctcgcc
tgctacgatcccgaaatggatgcttatcagaccctctgcaagattgggacaggattttct
gatgaagaccttcggacatttagtgagacattgaaggcgcatgttattgatgcccccaaa
agttattatagttatgaaaacagtatgaacccggatgtatggtttgaggcggcgtgtgtt
tgggaagtgcgttgcgctgacttgtctctgtcgcctgcgcacagagcagctctcggccta
gtggaccgggataagggcatctcacttagatttcctaggttcatccgttgtcgtgacgat
aaacgtcccgagcaagcgacgagcgcacggcaggtggccgatatgtatcttgcccaggat
caagtcaaaaacacagccggaaataaaactgctcaagaagacgatttttactaa

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