Pieris rapae (cabbage white): 110997110
Help
Entry
110997110 CDS
T05162
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
prap
Pieris rapae (cabbage white)
Pathway
prap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110997110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prap03019
]
110997110
Enzymes [BR:
prap01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
110997110
Messenger RNA biogenesis [BR:
prap03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110997110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
Motif
Other DBs
NCBI-GeneID:
110997110
NCBI-ProteinID:
XP_022120788
LinkDB
All DBs
Position
17:8387134..8417817
Genome browser
AA seq
651 aa
AA seq
DB search
MEVTRKNFKEVLPLVSVSIEEADFLVIDAEFSGLIKGREVSMFDSPEEYYLTLLNGSTEF
LLIQFGLCAFIWDEKTKKYRNDAYNFYLFPRGGPGYDKMFLCQSSSLEFLALQGFDFNKL
FRDGISYVTDPVETKLRENLTERQKSYSNDKGTITIPDEYKAQIEDICKNVGAFVEENKA
NEMEIDRCNAFVRRLLFQELGSRFKNDVFLETKVLENKDRTLKITRMSSSDDRKNKDQER
KEKEWEDLEDIISFSKVARLISQSGKLVIGHNMLLDLLHTLNHFFQPLPVDYPSFKEFAH
CMFPRVLDTKYMSSLPPFKDKLTSSVLQHLLVTLSQPPFSMPDIDSIDGRGYCQSPDKQH
EAGYDAYVTGLCFLSMHAHLARMRGEESGRVTADSVQLRPFLNKVFLAKTAHQDSPYMNL
AGDDPSPSREHIFHLTFPRDWQRNEINQLFSAYGQIIVQFLDDKSALVALTRRDLAKTVV
RAFANNKKVVLVPFSKYKQRKAKELQLQALEGREESSPVYVQVNETDASRNDDGIHCIDI
GSPIKRRRSSSLSTPGKKVVRKRTSSGIFQVEESEPPLKRPEIPQKETGKEKTREIQTNG
GRKVSEEKKKEKAASLKRKDIEIRKDMVLDKFDSKSTAQCVTAFKENDCWD
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atggaagtaactcgcaaaaattttaaagaggtgctgcctttagtatccgtatctattgaa
gaagcagactttctcgtaatcgatgcggagttctcgggcttaataaaaggcagagaggtg
tctatgtttgattctcctgaagagtactatttgacactgttaaacggttctacagagttt
cttttaatacagttcgggctatgtgcatttatttgggatgagaaaacgaagaaataccga
aatgatgcgtataacttctacttatttcccagggggggaccaggatatgacaaaatgttt
ttgtgccaaagttctagtttagaatttcttgctttacaaggttttgactttaacaaactg
tttagagacggtatatcatatgtcacagacccagtagagacaaagctaagagaaaacctg
actgaaaggcaaaaatcttattctaatgacaagggaacaataactattcctgatgagtat
aaagctcagattgaagatatctgtaagaatgttggtgcattcgtcgaagagaataaggca
aatgagatggaaattgatagatgtaatgcatttgtgcgacggctgctcttccaagagcta
ggctcacgatttaaaaatgatgtgttcttggaaactaaagttcttgagaataaagacagg
actttgaaaataactcgaatgtcatcatctgatgatagaaagaataaggatcaagagagg
aaagagaaagaatgggaagacttagaagatatcatttcattctcgaaagtcgcaaggtta
attagtcaatcgggaaaactagttataggccacaatatgttactcgatcttctacacaca
ttgaaccacttcttccaaccattgccagttgattacccatccttcaaagaatttgcacac
tgcatgttcccgagggtattggatactaaatatatgtcaagcttaccgccgtttaaagat
aaattaacctcaagcgttcttcagcatcttctggttacgttatcccagccaccattttca
atgccagatatcgattcaatcgatggacggggttactgccaatcacctgacaagcaacac
gaggcgggatatgacgcctacgtcaccggtctgtgtttcttatctatgcacgctcatcta
gcgcgcatgcgcggcgaagagtcgggacgggtgacagctgacagcgtgcaattacggccc
ttcttaaacaaagtgtttttggcgaagactgcgcatcaggattcgccgtatatgaatctc
gctggtgatgatccatcaccttcaagggagcatatcttccatttgacgtttccaagggat
tggcagaggaatgaaattaatcaactgtttagcgcttatggtcaaataattgtacagttt
ttggacgataaatccgcgttggtagctttgacccgccgggatctcgccaaaacagttgta
cgagcgttcgccaataataagaaagttgttcttgtaccgtttagtaaatataagcaacgg
aaagccaaggagttgcagttacaagcattagaggggcgtgaggagtcttcgccggtgtat
gtgcaagtaaatgaaaccgacgcttcacggaacgatgacggtatccattgcattgatatt
ggctcgccgattaaacgcaggagatccagtagcttaagcacacctggcaagaaagtcgtg
aggaagcgcacgtcttctgggatcttccaggttgaggagtcagagcctccacttaagagg
ccagaaattccccaaaaggaaaccgggaaggaaaaaacgcgggaaattcagaccaacggt
gggcggaaagtatccgaagagaaaaagaaagagaaggccgcaagtttgaagaggaaagat
atagaaataagaaaagacatggtattagataagtttgatagtaaaagtacggcacagtgt
gtaacggctttcaaagaaaatgattgttgggattaa
DBGET
integrated database retrieval system
