Pieris rapae (cabbage white): 110997148
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Entry
110997148 CDS
T05162
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
prap
Pieris rapae (cabbage white)
Pathway
prap03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
prap00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110997148
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
prap03041
]
110997148
Enzymes [BR:
prap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110997148
Spliceosome [BR:
prap03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
110997148
Complex B
110997148
Complex C
U2 SnRNP specific factors
110997148
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
110997148
NCBI-ProteinID:
XP_022120858
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All DBs
Position
4:501986..512998
Genome browser
AA seq
743 aa
AA seq
DB search
MSGSGKGLGFAGFTMPKRNPSTVSLHAVPPPTASMNNVPPPSSGLSKQGYSTMNAITQNA
MTGNWGTLGKKRAKTEDEYFDDDDEPPTPALAYIPAPGSPTNDMAKENNDEVDPLDAYMA
GLEQQAAKDLMTSKENEATGKGDVARGTRGDIDDMDDEESYYKYMEDNPLTAPDDGSDVE
IEYDEDGNPIPPPKKKFIDPLPPIDHSEIRYEPFEKNFYTPHEDIEKLTNEQVEELKNNL
GVKISGPEPPRPVSSFAHLGFDEQLMKAIRRSEYSQPTPIQAAGVPAALAGRDLIGIART
GSGKTAAFLWPLLVHIMDQKELAPGDGPIGLILAPTRELAQQIYMEAKRFGKVYNIRCVC
CYGGGSKWEQTKALEGGAEIIVGTPGRVIDLVKCKATDLGRVTYLVLDEADRMFDMGFEP
QVRSICNHVRPERQALLFSATFPRRVEKLARDALHDPVRVQHGAAGEACHLVTQHVRIFN
RPEEKWPWLLQNLVEFLSAGSILIFVTKKLDAEQTAANLGVQQYDALLLHGDMDQADRNK
VITAFKRQEQNILVATDVAARGLDIPHIRTVINYTVARDIDTHTHRVGRTGRAGVRGDAY
TLLAKQTDKEFAGHLLRNLEGAQQEVPEELTHLAMQSAWFRKSRFKKGKGKNLNIGGCGL
GYKERPGLPNISEEPVVSVPAGGPATDRLASLKQAFRSQYNKFTASTDHSWEQTRPVLQP
GVNAPAAQEEKRVRKGGKKSRWE
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgagtggtagcggcaaaggtttaggcttcgccggatttactatgcctaagcgcaatcca
tcaactgtttctttgcatgctgttccgccccccacggcgtctatgaacaatgttccaccc
ccatcatcgggtctttctaagcaaggctattcgactatgaatgcaatcactcaaaatgct
atgactggaaattggggtacactgggaaagaaacgcgctaaaacagaggatgaatatttt
gatgatgatgatgaacccccaacacctgctctagcttatataccagctccaggaagtcct
accaatgatatggctaaagagaataatgatgaagtagatcctttggatgcctacatggct
ggtttagaacaacaagcagctaaggatttgatgaccagtaaagaaaacgaggcaacaggc
aagggggatgtggcaagaggaactagaggagatatagatgatatggatgacgaagaaagc
tattacaaatacatggaagacaatccactaacagcaccggatgatggttcagatgtagaa
attgaatatgatgaggatggcaaccctattccacctccaaagaagaagtttattgatccc
cttccaccaatagaccactctgaaattcggtatgagccatttgaaaagaatttctataca
ccacatgaagatattgagaaattaactaatgaacaggttgaggaactgaaaaataattta
ggtgttaagatttcagggcctgagccgccaagaccagtgagcagttttgcacatttgggt
ttcgatgagcaacttatgaaagcgattcgtcgctcagaatattctcagcccactccgata
caagctgctggagtaccagccgcacttgccggtcgagatctcattggtattgcgcgtact
ggttcaggaaaaactgcagcgtttctttggccgttattggtacatattatggatcagaaa
gagttggcaccgggcgatgggccaattggacttatcttggcaccaactcgagagttggct
caacagatatatatggaggcgaagcgatttggaaaagtatacaacatacgatgtgtatgt
tgttacggcggtggatcgaaatgggaacaaaccaaagctttagaaggtggtgctgaaata
attgtaggtacaccagggagagttattgatttagttaaatgtaaagcaactgatttgggt
cgagttacatatctggtcctcgatgaagctgacagaatgtttgatatgggatttgagcca
caagtccgttcgatatgcaaccacgtgcggcctgagaggcaggcgttgctgttctccgcg
acgtttccacggcgggtggagaagttggctcgggacgcgttgcacgatcccgtcagagtg
caacacggcgccgcgggggaggcctgccatctcgtcactcagcatgtccgcatattcaat
aggccggaggagaaatggccttggttacttcaaaatcttgttgaatttttatctgctggc
agtattttgatatttgtcacgaaaaagttagatgcagaacagacagcggcaaatcttggc
gtgcaacagtatgatgcgttactgctgcatggagatatggaccaagctgataggaacaag
gtcatcacggcgtttaaacgccaagaacaaaacattctagtcgccaccgatgttgctgct
cgtggtttggacatcccacacattcgtactgtgataaattacacagtagcgagggatata
gacacgcacacgcaccgcgtgggacgaacgggacgtgcgggtgtacgcggagacgcgtat
actcttctggcgaagcagaccgataaggagtttgctggacatttgctgaggaatttggaa
ggagcacagcaggaagttccagaagagttgacacatttagcgatgcagtcggcgtggttc
agaaaatcccgcttcaagaagggaaagggaaagaatttgaacattggtggctgtggattg
gggtacaaggaaaggcctggcctaccaaatatcagcgaagagccagtagtgagtgtccca
gccggaggcccagccacagatcgccttgcctcgctcaaacaggccttccgatcgcagtat
aataagttcacagcatcaacagaccactcgtgggagcaaacgcgtcccgtactccaaccc
ggggtgaatgcccctgccgcacaagaagagaagagagtgagaaagggtgggaagaagagc
cgctgggaatga
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