Pieris rapae (cabbage white): 110997280
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Entry
110997280 CDS
T05162
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
prap
Pieris rapae (cabbage white)
Pathway
prap03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
prap00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
110997280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prap03021
]
110997280
03036 Chromosome and associated proteins [BR:
prap03036
]
110997280
Transcription machinery [BR:
prap03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
110997280
Coactivators
SAGA/TFTC/STAGA complex
110997280
Chromosome and associated proteins [BR:
prap03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
110997280
STAGA complex
110997280
TFTC complex
110997280
SAGA complex
110997280
SLIK complex
110997280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
EIF3I
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
WDR90_beta-prop_4th
ANAPC4_WD40
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_IFT122_1st
WD40_RFWD3
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_Vps41
VPS8_N
DUF6197
RhoGAP
Beta-prop_WDR35_TULP_N
Beta-prop_ELP1_2nd
Motif
Other DBs
NCBI-GeneID:
110997280
NCBI-ProteinID:
XP_022121039
LinkDB
All DBs
Position
16:7345637..7351717
Genome browser
AA seq
651 aa
AA seq
DB search
MGEKSTPLLAVLQLLKKYNLKGTEEILRKEANLGDTEFQNLDLPEVEIANILSVHHTESD
PFTYEHAYDCLKKFIENSLDICKYELSTLLYPVFVHMYLSLILYDHHEHAAKFLERFGPE
QEDYYQDDLQQLSIVKAKEQIKGNELAEIYSTNKFDVQLSRDASSQLKRFLHEQKSSPVI
INIINNHILIDIHDGPGRTQAQVKATAGGILGEASRNENRAKVYYGLLKEPYIEVLATPP
EDEEEVEETPDKPKKKKAKKDNVFMKKPKVDPNAPPTDRIPLPELKETDKIEKGKALREA
SKRVQLGPETLPSICFYTLLNSGHTALCADICDDSSLLAVGFNTSNIKVWTLTSVRLRGM
KSVDKLQDIDKEAGDVLVRMMEEKDRDTCRTLFGHSGPVYKVAFDPFKTLLLSCSEDSTI
RLWSLQCWTCVVVYRGHVWPVWDVRWSPHGHYFASASHDRTARLWATDHHQPLRFFAGHL
SDVDCVQFHPNSNYVATGSSDRTVRLWDCFTGSQLRLMTGHKRPILTLSFSVCGRWLASG
GGGGEVVIWDLSSGAPAAHLPLHHTAPVTALAFSRDGALLASGSLDCTIKLWDFALITDE
STNDENIASSSPAKEDKILLRSFATKNSPLKNLHFTRRNLLLAVGSYEGSS
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgggggagaaatcgacccctcttttggcagtattacagctattaaagaaatataattta
aagggcactgaagaaattttgcgaaaagaagctaacttgggagataccgagttccaaaac
ttagatttacctgaagttgagatagcaaacatactctcagtacaccacactgagagcgat
ccttttacatatgaacatgcatatgactgtcttaaaaaatttattgaaaactctcttgat
atttgcaagtatgaattgtcaactctcttgtatcccgtatttgttcatatgtacttatca
ttgatattgtatgatcatcatgaacatgcggcaaaatttttggaaagatttggtccagaa
caagaagattattaccaggatgatctacaacaactatctattgtaaaagctaaagagcaa
attaaaggaaatgaattagcagagatttacagcacaaacaaatttgatgttcagctatcc
agagatgcttcttcacaattaaagagatttcttcatgagcagaagagttctccagtgatt
attaatataattaacaatcacattctgattgacatacatgatggtcccggtaggacacaa
gctcaagtgaaagcaactgctggaggaattcttggggaggcctccagaaatgaaaatcgt
gcaaaggtttactatgggcttctaaaggagccatacattgaagttcttgctaccccacct
gaggatgaagaggaagtggaggaaacacctgacaaacctaaaaagaaaaaggcaaaaaag
gataatgtatttatgaaaaaaccaaaagttgatccaaatgcaccacccacagacagaata
ccactacctgaattgaaagaaacagataaaatagaaaaaggcaaagcgctaagagaggct
tcaaagcgagtccagttgggaccagaaactctgccttccatttgcttctatacattactg
aacagcggacatactgctttatgtgcagacatatgtgacgactcttctttgctggctgtt
ggttttaacacttcgaatattaaggtttggactctgacatcagtcaggcttcgaggcatg
aaatccgtggacaaattgcaagatatagacaaggaagcaggtgatgtcttggtaaggatg
atggaagaaaaagacagagatacttgtcgcactctgtttggtcatagcggaccagtgtat
aaagtcgcgtttgatcctttcaaaacattactgctgtcttgctctgaggattctacaatt
cgtctatggtcgctgcaatgctggacgtgtgtggtcgtgtaccgtggccacgtttggccg
gtatgggacgtccgatggtcaccccacggacattactttgcgtccgcctcacacgatcgt
acggcgcgtctttgggccactgaccatcatcagcctttgaggttctttgctggacatctt
tcggacgtcgattgcgtgcagttccacccaaactcaaactacgtggcgacgggatccagt
gaccgaactgtgcgtctttgggactgtttcacagggtcacaacttcggctcatgacagga
cacaagcgtcccatactaacgctgtccttctctgtgtgcggtcgttggcttgcatcgggt
ggtggtggtggcgaagtggtcatttgggatctgtcgtcgggggctccagcggcccatctc
cctctgcatcatacagcacctgtcactgctctagctttcagccgggatggagcactactt
gcctcaggatccttagattgtacaataaagttatgggactttgcactgatcacggatgaa
agtactaatgatgaaaacattgctagcagttcaccagcaaaagaagacaagattttgcta
agatcttttgcaactaagaactccccattaaagaatttgcacttcacacgtcgcaacctt
ttgttagctgtagggtcatatgaaggaagttcctaa
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