Pieris rapae (cabbage white): 110997731
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Entry
110997731 CDS
T05162
Name
(RefSeq) 5'-3' exoribonuclease 1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
prap
Pieris rapae (cabbage white)
Pathway
prap03008
Ribosome biogenesis in eukaryotes
prap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prap00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
110997731
09123 Folding, sorting and degradation
03018 RNA degradation
110997731
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prap03019
]
110997731
03009 Ribosome biogenesis [BR:
prap03009
]
110997731
03016 Transfer RNA biogenesis [BR:
prap03016
]
110997731
03036 Chromosome and associated proteins [BR:
prap03036
]
110997731
Messenger RNA biogenesis [BR:
prap03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
110997731
mRNA degradation factors
5'-3' decay
5' exonucleases
110997731
Ribosome biogenesis [BR:
prap03009
]
Eukaryotic type
Pre-60S particles
RNases
110997731
Transfer RNA biogenesis [BR:
prap03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
110997731
Chromosome and associated proteins [BR:
prap03036
]
Eukaryotic type
Gene silencing
piRNA pathway
110997731
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Motif
Other DBs
NCBI-GeneID:
110997731
NCBI-ProteinID:
XP_045488311
LinkDB
All DBs
Position
19:complement(2227413..2257205)
Genome browser
AA seq
1468 aa
AA seq
DB search
MGVPKFFRYTSERYPCLNELVKQYQIPDFDNMYLDMNGIIHNCSHPDDSNPHFRITEEKI
FKDIFHYLSILFQIIKPKKLFFMAIDGVAPRAKMNQQRGRRFRSAREAEELEAQAKAKGE
VLPTEKRFDSNCITPGTVFMARLHEQLKYFVKMKISQDPLWSKVKVILSGHETPGEGEHK
IMDYIRWARSQPDYDPNTRHCLYGLDADLIMLGMCTHEPHFALLREEVKFGKTTQRATSP
EETNFYLLHLSLLREYLEQEFISIKENLPFKYDIEKIVDDWVLMGFLVGNDFIPNLPNMH
ISNDALPLLYKTYMTVLPTLDGYINEAGDLNLARFEVFMQELAKIDKEKFQDTYADLKYF
EMKTGRRPNANERKDYKPNNDDTFNVNIDDIKANKPDDELQALINATQEMFMDDVAVDDD
DDEYEETSDEEATIEMEFILHKKDYYMNKLDYSKVTDEVLADQAEGYVRAIQWNLFYYYK
GCPSWCWYYPHHYAPYISDIKGFKDLKIEFELGDPFKPFEQLLAVLPAASKHLLPTPFHD
LMTDEDSPIVHYYPIHFETDLNGKKNDWEAVVLIPFIDEVNLLSAMSPCYQRLTEEELKR
NMHGPMLVYNWSPTALGTVQAPDFFPPISCHAIEQAVFRTELEVREENLKRGMLPNAQRD
LLFPGFPTMRHLNYQTQLKKCKVKVFDQPSRNENMIVQLLPEEDTNPPLPELAMDLLGKI
IWVGWPHLTRAKVISVSNEKIRLHHNDQQTPVGLHYSTEQNTGNLHKQWISERSTIIEHN
MNRLGIELGDVNVIVHAKNLKGYKYVIQDNVRMAMEEEWCDTPCGYAFQAIVANAKASEL
KPPAKYLTPTEAYPTGDTVFLLTQGQYYGCLATVVNADAARSGRIKVCVREASEPVPRAQ
SAACAYRSANHAAAACGISAQMLSRITGSILVISGVRNDLPTETQSKINIGLNLKFNKKN
QEVSGYTRRCKVTNSWTYSERCVELVKSYAKEYPELFDKLAYTMNRDVFFEGDLWPDAVG
QSKPQEVQKWLKSQPHNGAARRQCGSEALEPEEMKAIWKDLEEQLKEISSQKTVNLSVKW
NVLYKPELHEGNISPDSNADYKMYDRIVCVARNITVPLGAKGTVTAIYQPTDGNTVRLSD
KMNAQPTYQVMFDQPFAGAMSEDLFEESRFYRMLPTNMLNISYGRQIRNVQTDSNEDTNS
WGFKQPPAVLRRDNTHHSAFASYSPPWEMKPATPEAKTPEATNGGQKEDPTTLLRSLLKI
SENATDQTKQNKNKDEVNSNWRSKDKQPTIPQAKTQPQNWRKDTEYRPPVPHSDWVNSNS
NYYKNQPQAPTFVPFAPQYPPPQYRPRNNFPKHLPSVSNLLPSWSQNSPAPFQPNQANEN
PSNGQSNQSRTNQAVNNPFVPLQVQTSQRRAHNVNQPPRNMESQPPTQSSLPKPQPVVAQ
VPQNNQPQTNRTKKRKPRIAANLPFQFD
NT seq
4407 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttccgaagtttttcagatataccagtgaaaggtacccttgtctaaatgagttg
gtgaagcaatatcagatccctgattttgataacatgtatttggatatgaatggcattata
cacaactgctcacatcctgatgactcaaatccacatttccgaataacagaagagaaaata
tttaaggatatttttcattatttaagcattttatttcaaataataaagccaaagaagctg
ttcttcatggctattgatggtgttgctccaagagccaaaatgaatcagcagagaggtcga
cgtttccgatctgcaagggaagcagaagaattagaagctcaggctaaggctaaaggagaa
gtgctgccaactgaaaagagatttgacagtaactgtattacaccaggaactgttttcatg
gcaaggcttcatgaacagttgaaatattttgtaaaaatgaagattagccaggatccatta
tggtcaaaagttaaagtgattttatctggacatgagactcccggagagggtgaacataag
attatggattatattcgttgggctcgttctcaaccagactatgacccaaacactcggcat
tgtttgtatggtctggatgccgatctgattatgttaggaatgtgtactcatgaaccacac
tttgctttactaagagaagaggtaaaatttggcaaaacaacccaaagagcgaccagccca
gaagagaccaacttctaccttttgcatttatctttactccgagagtatttagaacaagaa
ttcatatctataaaagaaaatcttccatttaaatatgacattgagaaaattgttgatgat
tgggttttaatgggatttttggttggaaatgattttattcccaacttaccgaatatgcat
ataagtaatgatgcattgccactattgtataagacgtatatgactgttctaccgacttta
gatggatatataaatgaagccggtgacctgaacctagctaggtttgaagtgttcatgcaa
gaattggctaaaatagacaaagagaagtttcaagatacttatgcagacctgaaatatttt
gaaatgaaaactgggagacggccaaatgctaatgagagaaaagattacaaaccgaacaat
gatgatacgttcaacgtaaacatagacgatataaaggcaaacaaaccagatgatgaatta
caagctctcatcaatgctacacaggaaatgttcatggacgacgtcgcagttgatgatgat
gatgatgaatatgaagagacaagtgacgaggaagcaactattgaaatggagttcatatta
cacaaaaaggactattatatgaacaaattggattattctaaggttaccgatgaagtacta
gcagaccaagccgaaggctatgtgcgtgcgatacaatggaatttgttctattactataag
gggtgcccttcctggtgctggtattatccgcaccactacgcaccctatatatcagatatt
aaggggttcaaggatttgaaaattgagtttgaattaggcgatccatttaagccatttgaa
cagctgttggcagtattaccagcagcaagtaagcatctcctaccgactccattccatgac
ctgatgacggatgaggattcaccgatcgtccattactacccaatacactttgaaacagat
ctcaatggaaagaagaacgattgggaggctgttgtcttgataccatttattgacgaggtc
aatctcttatcagcaatgtcaccgtgttatcagcgtttgacggaagaagagcttaagcgt
aatatgcacggacctatgcttgtatataactggagtcctacagctttaggtacagtgcag
gcgcctgactttttcccaccgatatcctgtcatgcaatagaacaggcagtattccggaca
gaactggaagtgagagaagagaacctaaaaagaggaatgttgccaaacgcgcagagggat
ctcttgttccccggattccccacgatgcgccacttgaattatcagacacaattaaaaaaa
tgcaaggtcaaagtattcgaccagccctcgcgcaatgagaacatgatagtgcaattattg
cccgaagaagatacaaacccacctctgccggagttggctatggatttactggggaagatc
atctgggtcggctggccgcatcttactagagccaaagtcatatcagtatcaaacgagaaa
attcgtctgcatcacaacgatcaacaaaccccagtaggtctccattactcgacggaacag
aatacgggaaacctccacaagcaatggatctctgaacggtctactattattgaacataat
atgaatcgtctaggcattgaacttggtgacgtcaatgttatcgtacatgccaaaaactta
aaaggttataaatacgtaattcaagacaatgttcgcatggctatggaggaggagtggtgt
gatacaccatgtggatacgcatttcaggctatagtggctaatgccaaggcttcagagctg
aagcctcctgctaaatatctcactccaacggaggcctatcccacgggagataccgtgttc
ctgttgacgcagggacagtactatggatgtcttgcaacggtggtaaatgcggacgcggcg
cgtagcgggcgtataaaggtatgcgtacgagaggcctccgaacccgtaccacgggctcaa
tccgccgcttgcgcttatcgctccgctaatcacgccgctgctgcttgtggtatatctgcg
caaatgctctcgcgcataacaggatcgattctggtgatatcgggagtacgaaatgatttg
ccaacggagacacaatccaagatcaatattggactcaatctcaagtttaataaaaagaac
caagaagtatcaggctatacccgtcgttgtaaagtgacaaactcatggacatactcggaa
cgatgtgtcgagttggtgaaaagttatgcgaaggaatatccggaattgttcgacaaactt
gcctatacaatgaaccgagatgtattctttgaaggcgatttgtggcctgatgcagtgggt
caaagtaaacctcaagaagttcaaaaatggctgaaatcgcaaccccataacggcgcagcg
cgcagacagtgtggttccgaagccctggagccggaagagatgaaggctatttggaaggat
ttggaggaacagctgaaagagatcagcagtcaaaaaactgttaatttgagtgtcaagtgg
aatgtgttgtataagccggaattgcatgagggcaacatttcgccggattcaaatgctgac
tacaaaatgtatgaccgcatagtatgtgttgcccgtaatataactgtgccgcttggggct
aaaggcacagtaacggcgatctatcaaccgactgatggcaatactgtgcggttatcggat
aaaatgaacgctcaacctacgtatcaggtgatgttcgatcaaccctttgcaggcgcgatg
tctgaagatctgtttgaagaatctagattttatagaatgctaccaacgaacatgttaaat
atatcctacgggcgccaaatccggaatgtacaaacggacagcaacgaagatacaaattcg
tggggcttcaaacaaccgcccgctgttcttcgcagggacaacacacaccactccgcgttc
gccagctatagtcccccgtgggagatgaaaccagctactcctgaggcaaaaacaccagag
gcaactaatggcggacaaaaggaagacccaacgaccctcttgagaagtcttctgaaaata
agtgaaaatgcaacggaccagacaaaacagaataagaacaaggatgaagtgaactccaat
tggagaagtaaggacaaacaacccacaataccacaagcgaaaactcagccacagaattgg
agaaaggacaccgaatacagacccccagtgcctcatagcgattgggtgaattccaactct
aattattacaagaatcaaccacaagcacctacattcgtcccatttgccccacaatatccg
cccccgcagtatcgtcccaggaacaatttcccaaaacatttgcccagcgtgagcaattta
cttccaagctggtcgcagaactctccagcgccattccagcctaaccaagccaatgaaaac
ccgtcaaatggccaatccaaccaatcacggacgaaccaggccgtgaacaacccattcgtg
cctttacaagtgcagactagtcaaaggcgagcccacaatgtgaaccagcctcctcgtaat
atggagagtcagccaccaacacaatcgtcgctaccaaagccgcagcctgttgtagctcag
gtgccacagaataatcaacctcaaacgaataggaccaaaaagaggaaacccagaatagcg
gccaatcttccttttcagtttgactga
DBGET
integrated database retrieval system
