KEGG   Pieris rapae (cabbage white): 110999832
Entry
110999832         CDS       T05162                                 
Name
(RefSeq) collagen alpha-1(IV) chain
  KO
K06237  collagen type IV alpha
Organism
prap  Pieris rapae (cabbage white)
Pathway
prap04382  Cornified envelope formation
prap04512  ECM-receptor interaction
prap04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:prap00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    110999832
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    110999832
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    110999832
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:prap04147]
    110999832
   00536 Glycosaminoglycan binding proteins [BR:prap00536]
    110999832
Exosome [BR:prap04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   110999832
Glycosaminoglycan binding proteins [BR:prap00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   110999832
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 110999832
NCBI-ProteinID: XP_022124759
LinkDB
Position
16:complement(7058687..7070981)
AA seq 1849 aa
MAVRVLWLITALVPLSGVKTSPQDELYARGDIEENNINPSRWPPTEYWPTRGLSNRPDLP
TVQPSPPYSQQQASYPSQPSYPPQPSYPPQPSYPPQPSYPSPPSYSQSQPTYPRNNFAVY
DPVTHQRVPPNEITRNCTAPGCCVPKCFAEKGNRGFPGHQGSPGMRGLPGHEGAEGPQGP
KGQKGQVGPQGPRGPKGERGKPGAQGFVGLSGPPGPQGDTGAPGIPGRDGCNGTDGDPGI
MGSKGSQGPRGIPGPKGDKGDKGQAAHMGRYPKGQKGEPGADGMQGPQGPVGLPGSTGLP
GPKGNTGPMGPFGLRGDKGSKGTKGQSIQGDKGDRGDKGDRGPGCPPAPLVSVDNKGAIK
GVKGDSGTKGDKGEPGRIGEKGDTGLMGEPGLSGQMGIKGEKGLRGNPGERGRDGMFGPS
GPMGQKGDQGNDGLPGLPGRPGSKGEPGRDGQPGLRGLKGIPGPAGGRTGSRGPPGPPGP
RGYMGPAGAPGTDGRPGERGLSGPMGPPGGQGEPGTPGIEGPAGHKGDKGEPGLDGLQGE
TGPRGYDGPVGPTGPRGPKGEDGFSIPGERGNPGVPGLPGERGQKGEHGYQGLRGVPGNS
TLGTPGSPGEMGMPGEKGERGRPGSDGLPGNPGEKGNIGGRCNECWPGGPGPKGDHGSDG
IPGERGERGPSGPAGLTGERGSDGLNGLPGSVGAPGDRGDEGPMGPPGESGADAIIPSNL
VKGPPGERGPQGEKGLMGPKGDRGVMGPKGERGLNGMPGFKGDQGRMGTPGIDGIPGSDG
SPGIPGNKGMSIKGEKGELGSQGFKGDKGISGRGGLKGEPGQCPNYLQLLTKGEKGNQGA
PGPQGPQGMPGEKGDRGFTGLTGDKGQKGLTGRTGPVGPRGFPGLKGDKGELGSMGFPGT
PGDTGQRGFPGLPGMKGDKGEIGPSMPGPPGPTGFIGKKGDSGPRGIPGTPGKDGPMGPV
GLTGEKGDRGFPGSPGFPGHVGLKGEPGPVGPPGVPGVPGTPGRNGPKGQQGFPGKPGNP
GVIGLPGQKGDRGIQGIEGPKGFPGPRGHQGLKGATGYDGSPGEKGDKGELGFPGIPGEP
GLPGPIGPMGIEGPKGDQGFQGPPGLPGRTGDAGEKGDRGLPGPLGLKGEPGRAAEKGER
GFPGIPGLRGLDGRPGQDGQKGDKGDIGVPGIGIPGLSGEKGDIGFPGIPGVAGEPGEKG
NHGLPGASGIKGDRGPAGDVGLPGRPGLDGLPGPAGDVGLPGLQGVKGGKGERGFPGRDG
FNGLKGDLGPFGPPGLVGDKGQPGQKGDRGLPGPSLNVKGDKGDIGLPGLPGAKGQKGET
GQDGLQGEQGEKGDRGFTGERGDYGQTGDRGQKGDTGPAGPVGTSGRTIKGEKGLPGIPG
KHGGRGLPGATGEKGERGLPGLPGQTGRPGTPGQPGPQGEKGDQGREGVAGPPGFDGTPG
VMGPPGMIGERGEKGDKGAVGFGAQGEKGNQGVPGLPGLQGERGEKGDRGFDGLNGEPGP
MGEQGDKGDMGFQGVVGLPGVEGLKGDKGDAAIVVYGAKGEPGPRGPPGFNGAPGQDGIP
GTRGLDGLPGEKGDQGLPGPYGPQGPPGLQGIQGFQGERGEVGRTGFPGAPGLPGAPCQN
RDYLTGILLVKHSQTEIVPECEQGHVKLWDGYSLLYIDGNEKAHNQDLGHAGSCVRKFST
MPFLFCNLNDVCNYASRNDRSYWLSTNNPIPMMPVENNEIKKHISRCVVCEVPANIIAVH
SQTLDIPSCPVGWSSLWIGYSFVMHTGAGGNGGGQALASPGSCLEDFRATPFIECNGEAG
TCHHFANELSFWMTTIEDNKQFDMPERETLKAGRLLQRVSRCAVCIKNT
NT seq 5550 nt   +upstreamnt  +downstreamnt
atggcggtccgcgtactttggttgataaccgcgctggtgccgctttcaggagtaaagacg
agtccgcaagatgaactttatgcaaggggagatattgaagaaaacaatataaatcccagt
cggtggccgccgacggaatactggccaacgagaggattatcgaaccgaccagacttacca
acggtccaaccctcacctccgtattctcaacaacaagcatcctatccttcacaaccttca
tatcctccacaaccttcctatcctccacaaccttcctatcctccacaaccttcctatcct
tcaccaccatcctattcacaatcacaaccaacttatcctcgtaataactttgccgtttac
gatcctgttactcatcaacgagtgccgcctaatgaaattacacggaattgtactgcgccc
gggtgctgtgttcctaaatgttttgcagaaaaaggaaacaggggatttcctggacatcaa
gggtcaccgggaatgagaggtcttccaggacacgaaggtgctgaaggtccacaaggtcca
aaaggccaaaaaggtcaagtaggaccacaaggtccacgaggccctaagggtgaaagagga
aaacctggtgctcaaggttttgttggattatctggaccaccaggacctcaaggagacacc
ggagcacccggaatcccaggaagagacggttgtaatggaaccgatggagatcctggtata
atgggatccaaaggatcacaaggacctcgtggaataccgggaccgaaaggagacaagggt
gacaaaggtcaagctgctcatatggggaggtacccgaaggggcaaaaaggagaaccaggt
gctgatggcatgcaaggccctcaagggccagttggactacctggttctactggacttcca
ggacctaaaggaaacacgggaccgatgggtccatttggtctaaggggagataaaggatcg
aaagggacaaagggccaatctatacaaggagacaaaggtgacagaggagacaagggtgat
agaggtcctggctgcccaccagcaccattagtttccgttgacaacaaaggcgctataaag
ggtgtcaaaggagatagtgggactaagggtgataagggggaacctggaagaatcggagag
aaaggagacaccggtctcatgggtgaaccagggttgtcggggcaaatgggtattaaagga
gaaaagggtttaagaggaaatcctggagagagaggtcgtgatggtatgtttggcccttca
ggcccaatggggcagaaaggtgaccaaggcaacgatggattgccgggtctaccaggccgg
cctggatctaaaggagaacctggaagggatgggcaacctggcttaagggggttaaaaggt
attcctgggccagctggtggaagaactggatctcgtgggccccctggtccacctggacca
agaggatatatgggacctgcaggtgctccgggaactgacggaagaccgggagaaagaggt
ttatcaggccctatgggacctccagggggacaaggcgaaccaggtacacctggtatagaa
ggacctgctggtcacaaaggtgataaaggagaacccggtctagatggtttgcagggtgaa
acaggcccaaggggttatgatggccccgttggacccactggtccacgtggtcctaaagga
gaggatggattttcaatccctggtgaaagaggaaatcctggagtgccaggattacctgga
gaaagaggtcaaaaaggtgaacatggttatcaaggcctaagaggtgttccaggcaattct
actttaggtacacctggtagccctggagaaatgggaatgccaggtgaaaagggtgaaaga
ggtcgtccaggctctgacggattacctggtaatcctggagaaaagggtaacatcgggggc
cgatgtaatgaatgctggccgggtggtccaggtccgaaaggtgaccatggatctgatggt
attcctggagaacggggtgaaagaggtccttctggtccagctggtttgactggtgaacga
ggctctgatggacttaacggattaccaggctcagttggagctccaggtgatagaggcgac
gagggccccatgggaccacctggagaaagtggagctgatgcaataataccttccaattta
gtaaaaggacctccaggtgaaagaggtccacaaggagagaaagggctgatgggaccaaag
ggcgatagaggagtcatgggacctaaaggggaacgtggcttaaatggaatgccagggttt
aagggtgatcagggtagaatgggcacacctggtattgatggtatacctggtagtgatgga
tcaccaggtattccaggaaacaaaggaatgtcgataaaaggagaaaaaggagagcttgga
tctcaaggattcaaaggtgataaaggtatatcgggaagaggtggtttaaagggtgaacct
ggacagtgtccaaactacttgcaattattgacaaaaggtgaaaagggtaatcaaggggca
ccaggtccacagggcccacaaggaatgcccggagaaaagggtgacagaggttttacagga
ttgacaggagataaaggtcaaaaaggattaactggacgtactggtcctgttggtcctaga
ggtttcccaggacttaaaggagataaaggagagttaggatcaatgggtttccccggtacc
cctggtgatactgggcaaagaggatttccaggtcttcctggtatgaaaggagataaaggt
gaaattggaccgtcaatgccaggacctcctgggcctactggatttataggtaaaaaagga
gacagtggacccaggggtatacctggtacacctggtaaggatgggcctatgggacctgtg
ggtttaacaggtgaaaagggagatagaggttttcctggttcccctggatttccgggacat
gttgggttaaagggagaaccaggacctgttgggcccccaggagttccgggagtaccaggt
acaccaggaagaaatggaccaaaaggtcagcaaggttttccaggtaaaccaggaaatccg
ggtgttattggactacctggtcaaaaaggtgacagaggcattcaaggaatcgaaggtcct
aaaggattcccaggtccacgaggtcatcaaggcctaaagggtgctacgggatacgatggt
agtcctggagagaaaggtgataagggtgaattagggtttccaggtattcctggagaacca
ggtttgcctggaccaattggacccatgggaatagagggaccaaagggagatcaaggtttt
caaggccccccagggctaccaggaagaactggagatgcgggtgagaaaggtgatagaggt
ttacccggaccattagggctgaaaggtgaaccaggtagagccgcagaaaagggtgaacga
ggttttccaggtattccaggtctaagaggattagacggacggcctggtcaagatggacaa
aaaggagataaaggagatattggggtacctggaatagggattccaggactttcaggagaa
aagggagatataggttttcctggaatccctggagttgctggtgaaccaggtgaaaaagga
aaccatggtttgcccggcgcaagcggtattaaaggagataggggaccagctggagatgta
ggtttacctggtaggccaggattagatggattacctggtcctgctggtgacgtaggtcta
cctggtttacagggtgttaaggggggaaaaggagaaagaggttttcctggtagagatgga
tttaatggtctaaaaggagatctaggaccgtttggaccaccaggcttagtaggcgacaaa
ggacaacctggtcaaaagggagacaggggacttcctggaccatcacttaacgtaaaagga
gacaaaggggatatagggctcccgggattacctggtgcaaaagggcagaaaggtgaaact
ggacaagatggactgcaaggtgaacaaggtgaaaagggagaccgaggattcactggtgaa
agaggagattatggtcaaactggagatagaggtcaaaaaggtgacactggcccagccggt
ccagttggtacatctggacggactattaaaggagaaaaaggcttgccaggtattccgggt
aaacatggggggcgtggcttgccaggtgcaaccggagaaaaaggggagcgaggattaccc
ggattgccagggcaaacaggacgtcctggaacgccaggacaacctggcccacaaggggag
aaaggagatcaaggtcgtgaaggtgttgcagggccgccaggatttgatggaactcctggt
gtgatgggtccgccgggtatgatcggtgaaaggggagaaaagggagacaaaggagcggtt
ggatttggtgcacaaggagaaaaaggaaaccaaggagttcctggtctacctggcttacaa
ggagaaagaggtgaaaaaggagatcgagggttcgacgggctaaatggtgaaccaggacca
atgggagaacaaggtgataagggtgatatgggtttccaaggagtagtaggtttaccaggc
gtggaaggtctcaagggtgacaaaggtgatgcagctatagttgtatatggagcaaaagga
gaacctggacctaggggacctcctggctttaacggtgctcctggtcaggatggtattcct
ggaactagaggattggacggtctaccaggtgaaaaaggagatcaaggattaccaggccct
tatggaccacaaggacctcctggattacaaggcatacaagggttccaaggtgaaagaggt
gaagtaggtcgcactggattcccaggtgcaccaggacttcctggcgcaccttgccaaaat
agagattaccttacgggaattcttttagtaaaacatagtcagactgagatagtgccagaa
tgtgaacagggtcacgttaagctatgggatggatattctctactctatattgatggaaac
gaaaaagcgcacaatcaagatttgggccacgccggttcctgtgtccgcaaattcagcaca
atgccattcctattctgtaatctcaatgacgtttgtaattatgcaagtagaaacgatcgg
agctattggctatcaactaacaatcccatacctatgatgccagtagaaaataatgaaatt
aagaaacatatatcaagatgtgtcgtatgcgaagttccggctaatattatagccgttcac
agtcaaacactagatatacccagttgtccagttggatggagttctctatggataggatac
agtttcgttatgcacactggtgcgggaggtaatggaggtggacaagcacttgcaagtccg
gggtcatgtcttgaagacttccgagccacaccattcatagaatgtaatggtgaggcaggc
acttgccatcacttcgccaatgaactcagtttttggatgacaactattgaagacaataaa
cagttcgacatgcccgaacgagagacattaaaagcaggtcgtttactccaacgagtttct
agatgcgcagtttgtattaaaaacacgtag

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