Pieris rapae (cabbage white): 110999882
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Entry
110999882 CDS
T05162
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
prap
Pieris rapae (cabbage white)
Pathway
prap04512
ECM-receptor interaction
prap04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
prap00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
110999882
04518 Integrin signaling
110999882
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
prap00536
]
110999882
Glycosaminoglycan binding proteins [BR:
prap00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110999882
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
FnI_RECK
CFC
NELL_VWC_C
Motif
Other DBs
NCBI-GeneID:
110999882
NCBI-ProteinID:
XP_022124843
LinkDB
All DBs
Position
17:complement(5619174..5631633)
Genome browser
AA seq
1491 aa
AA seq
DB search
MWLAVIACLAFLLAPVVSKELSDGRDDFDVPQAQEADLINYDDYNPFGEDENAVIAERDF
RGSTTNQRGYGRPQQQVNQVPPVTCLDVGRSWSDGDTWKRDNCTLCQCFSGRVNCSVLPA
CLSAPSTSRPPVFTSPQPPVTVRGAQGFPGDEGPPGPPGSPGVGGIPGAPGIPGPVGPMP
DVNAYLAQLAATAGGDKGPAFDPYHYMQASVGAPGIRGIPGPQGPPGPQGFQGPRGEPGE
SGSPGPLGPPGERGPIGLPGKDGLPGEDGEPGPPGAAGQTGSRGSPGVPGIQGLKGHRGF
DGKDGAKGDQGLPGEKGPTGLSGQMGPVGPMGPVGPRGERGREGPPGSPGIRGVDGAPGT
PGLIGNVGKPGSPGFPGSPGLKGEIGVQGPKGSQGIQGPRGEPGRPGQSGEAGPPGLAGR
DGIPGEKGIQGQAGSAGPQGFPGPRGTPGVAGDAGIPGSKGMPGQPGERGLKGEIGIRGE
SGTPGPRGLPGVVGPEGKRGKRGLRGPAGNTGPQGERGLQGMRGLPGADGPMGLKGQPGE
RGNVGLPGLKGSSGDPGRTGPQGLPGQRGMMGRPGITGKSGPSGERGIPGADGRPGEQGL
QGLQGAPGLMGSPGERGLQGEPGKDGEVGQPGPQGPKGDFGRDGSPGAQGPPGPIGPSGE
RGSAGPTGPTGFPGIPGTAGLPGTPGKEGEPGVAGPPGPAGQVGPRGERGFTGDRGQPGA
PGIPGEKGESGAQGTDGLPGLEGPRGTKGHQGPMGPMGLPGPRGLTGFSGEKGERGSLGP
QGNEGPPGRQGEQGPQGPVGPSGPPGEPAERGEPGTPGVPGEPGAPGSTGERGQPGMQGV
PGLHGPPGLTGMPGLKGDRGYAGAKGQQGSPGSPGKQGENGQRGPSGPIGAKGARGEVGL
KGEIGRVGLPGRPGDLGPPGPQGSTGPSGIPGTPGAKGATGDSGRPGPPGSIGLTGPQGP
EGVKGERGNEGEPGMQGPVGPAGVSGERGPSGLPGLTGPPGPQGLRGVQGESGSPGKSGN
DGPPGPVGSPGPQGPPGPMGEPGPEGRPGKMGQPGIPGRIGDKGPMGQSGPPGSSGAPGL
QGPPGPAGPPGPSGERGPRGESGPSGVEGPQGPAGKQGIPGLDGAKGERGEAGAGGAKGH
AGIPGLPGIVGAPGRSGDRGLPGPIGPPGKDGDVGARGPPGRDGSPGLPGGLGPSGARGP
PGESGKHGSPGPAGPPGPPGPPGEGLAYDAAAIAAMLQQGSIKGPDPMGDDPNIPPRFFK
DDMPLAERKEIVMKAYERLKVSLNKFLKPDGSKEAPAKTCGDIKSHHPEFTSGQYWIDPN
GGDANDAILVHCDLTTGASCVFPKPMQSKDITHHGKNEAWLSEMEDGFTISYKADNSQLT
YLQLLSLNAVQNVTLHCQNTIGYYDPASKNYRHGVKLLAYNDAEILPKANNRLRYKALLD
ECQHKHQDWAKTIVQFETDKPNRLPLLDVAVRDVGRKNQMFRIELGLACFT
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgtggctagcagtaatagcttgcctggcatttctgctggctccagtagtcagtaaggag
ttgtctgatggaagggacgacttcgatgtacctcaagctcaggaggcagaccttatcaac
tatgatgattataacccttttggggaagatgagaacgcggttatagcagagcgtgatttt
cggggttctacgacgaatcaacgtgggtatggaagaccgcagcagcaggttaaccaagtt
ccgccagtgacatgccttgacgttggaagatcgtggtctgatggagacacctggaaaaga
gacaactgtactctttgtcagtgctttagtggaagggttaactgttcagtgttacctgct
tgtctatccgcgccgagcactagtcgcccgccagtttttacttcacctcaaccacccgtt
acagtccgtggggcacaaggatttccaggcgatgagggacctcctggccctcctgggtca
cctggggtcggtggtatacccggggcgcccggaattccaggacccgtaggacctatgcca
gatgttaacgcctatcttgcccagttagcagcgacagcaggaggagacaaaggtccagcc
ttcgacccttaccattacatgcaagcgtctgttggcgccccaggaattagaggaatacca
ggtcctcaaggtccgcccgggccgcagggttttcaaggtccccgtggagaaccaggtgaa
tcaggatcacccggaccactagggccacctggggaaagaggaccgatcggcttaccggga
aaggatggcttgcctggagaagatggtgagccagggccaccaggggctgctggtcaaact
gggtccagaggatctcctggtgttcccggtattcaaggattgaaggggcataggggattt
gacgggaaagatggagctaaaggagaccaagggttacccggtgaaaagggtccaacgggg
ttatctggacagatggggccagttgggccaatgggtccagtcggtccacgaggagaacgt
gggcgtgaagggccacctggatcgcccggaatcaggggagttgatggcgccccaggaaca
cctggtttaataggaaacgttggtaagcctggttctccaggatttccgggctcgcctggg
ttaaagggagaaataggtgtgcaagggcccaaaggaagtcaaggtattcaaggtcctaga
ggtgaacctggtagaccgggtcaatccggtgaggctggaccaccagggcttgctggtaga
gatggtattcctggagaaaagggaattcagggacaagctggatctgctggtcctcaagga
ttcccggggccaaggggcacccctggtgtagctggtgatgccggtattccaggctcaaag
gggatgccaggacaacctggtgaaagaggtctcaaaggagaaataggcataagaggggaa
tctggaacccctggtccccgaggtcttcctggtgtggttgggcctgaaggaaaacgagga
aaaagaggtttaaggggaccggcaggtaatactgggcctcaaggagaaagagggctacag
ggtatgcgaggattacctggagcagatggccccatgggcttaaaaggacaaccaggggag
cgtggaaatgtcggattacctgggcttaaaggcagttccggtgacccgggacgaacaggt
ccacaaggacttccaggacagagaggaatgatgggaagacctggaattactggaaaatcc
ggtccatcaggagaaagaggtatacccggagctgacggacgacctggtgaacaagggctc
caaggattacaaggagctcctggcctaatgggaagcccaggagaaagaggattgcagggt
gaacctggcaaagacggtgaagttggccagcctggaccacaaggtcctaaaggagatttc
ggacgagatggaagcccaggtgctcaaggtcctccgggtccaataggtccatctggtgaa
cgagggtcagcgggaccaaccggccctacaggctttccaggcataccaggaactgctggt
ttaccaggtactcctggtaaagaaggagaacctggagtagccggccctcctggtcctgcg
ggtcaagttggtcctcgaggggaaagaggctttacgggtgatcgcggccagccaggcgca
ccagggataccaggggagaaaggggaaagtggagcacagggtactgatgggctacctggg
cttgaaggacctcgtggtaccaaaggtcatcaaggcccaatgggtcctatggggcttccc
ggacctagggggttgactgggttttcaggagaaaagggagaacgaggatctctgggccca
caaggcaacgaggggcctcctgggcgccaaggagagcaaggaccccaaggacctgtaggt
ccttctggaccacccggtgaaccagctgaacgaggagaacctggaactcctggtgttccc
ggtgaacctggagcgccgggatcaacgggagaacgaggtcaaccaggaatgcagggtgtc
cctggtttgcatggacctccgggtctaactggaatgccgggacttaaaggagatagaggt
tatgctggtgcgaaaggtcaacaaggatcaccaggcagcccaggtaaacaaggagaaaat
ggacaaagaggtccttcgggtccaataggtgcaaagggtgccagaggtgaagtaggcctc
aaaggagaaataggacgagttggacttcctggcagacctggtgatttaggaccaccggga
cctcaaggaagcaccggtccttctggaatccctggtactcctggtgctaagggtgctact
ggggattccggtagaccaggtcctccggggtctattggactgacgggaccccaaggacct
gaaggagttaaaggagaaagaggtaatgagggcgaacctggaatgcagggtccagttggg
cctgcgggtgtgagtggagaaagaggtccatctggattacctggtttgactggaccgcca
ggacctcaaggattacgtggagtccagggtgaaagtggttctccgggaaaatctggaaat
gacggccctcctggacctgtaggcagtcctgggccacaaggtccacctggacccatgggt
gagcctgggcctgagggtcgtcccggtaaaatgggccagccaggtatacctggtcgtata
ggagacaagggtccaatgggacaatctggtccacccggttcttccggtgcacctggatta
cagggacctcctggcccagctggcccacctggtccgagtggagaaagaggtccaagaggg
gaatcaggaccttctggagtcgaaggacctcaaggccctgctggaaagcaaggtattcct
ggcctagacggagccaaaggtgaaagaggggaagcaggtgcaggcggggctaaaggccat
gccggaatacctggcttaccagggattgttggtgcgccaggtagatctggtgatagagga
ctacccggacctataggtcctcctggaaaggatggtgatgttggagcaagaggtcctccc
ggtcgtgatggtagccctggtctaccaggaggcctcggaccgtcaggggctcgtggccct
ccaggtgaatcgggtaaacatggcagcccgggtccagcgggtccacctggaccgccggga
cctccaggagaaggacttgcatatgatgctgcggcgattgctgcaatgttgcaacaaggt
tcaatcaaaggaccagaccctatgggtgatgatccaaatataccaccgcggttcttcaaa
gacgacatgcctcttgctgaaagaaaagaaattgtcatgaaggcctatgaacgcctgaaa
gtttcattgaacaaattcttgaagcccgatggttccaaggaagccccggctaagacctgt
ggagatattaagtcccatcatccggagttcactagcggtcaatattggatcgatcctaat
ggtggtgatgcaaatgacgccatcctggtacactgtgatttgacgactggtgccagttgt
gtcttcccaaaacctatgcaatctaaagacatcacccaccatggaaagaatgaagcctgg
ctcagcgagatggaagacggattcactatttcctacaaagcagacaacagccaactgacc
tacttgcaacttctatctttaaacgcggtgcaaaatgtgactttacattgccagaatacc
atcggatattacgacccggcctctaagaactacagacatggtgttaaacttcttgcttac
aacgacgctgaaatactgcctaaagcaaataatcgtctacggtataaggctttgttggat
gaatgtcagcacaagcatcaagattgggcgaagacaatagtgcaatttgaaaccgataaa
cccaatcgcctcccactattggacgtcgcggtaagggatgttggcagaaagaaccaaatg
ttcaggattgagctgggattagcatgcttcacatag
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