Pieris rapae (cabbage white): 111000113
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Entry
111000113 CDS
T05162
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog isoform X2
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
prap
Pieris rapae (cabbage white)
Pathway
prap04140
Autophagy - animal
prap04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
prap00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
111000113
04148 Efferocytosis
111000113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
prap04131
]
111000113
Membrane trafficking [BR:
prap04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
111000113
Hops complex
111000113
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_RING_C
Clathrin
zf-C3HC4_2
zf_RING_Vps8_fungal
DUF4562
HFX_2341_N
zf-RING_16
zf-C3H2C3
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
111000113
NCBI-ProteinID:
XP_022125154
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Position
10:2737358..2744599
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AA seq
973 aa
AA seq
DB search
MTSIFDQYEQASQVSQKVVPASEQMTSSGYINMQLEDNTPLFSKQRMNFNPSDLITHVAV
ASDYLVLAMANGKLFRMDLKMPDQQEEIQYTKIIQPNSKLTAIFLDPLGYHLLLAFAARN
KDGSPELVYLHRKSTKLKSVSKSRNYEVTEVGWNYENRSTSSTGPILLGTSQGHILEMEL
EAESDKMFTASQQYWRQIFDIGKGTDTPITGIQFHRVNNTSKYFIFVTTPTRLYQFIGHA
MISDDKPSLQSIFHSYLTTPETGFQEIPSTLKYSKLQFYFDKSNEPKTFAWLTEPGIFFG
QLDPSSQQNSNSLFTQGELINYPTDKGDGKESTPLSFVLTEFHALVMYSDGVKSVSLLNQ
ELVYEDRYNSEVHGKLKNIVKDSARRTIWAVTDKAVFRYKVNREERNVWRIYSDKEQFDL
AKLYCQNNPAYIDIINVKQADLLFTKGDYEKSAEIFAETQSSFETICLKFLEVDQINALK
VYLSKRLDALTDDDKTLLSMIVIWMTELYVSQLASLRRSGKEDSQEYHQFQSDLEVFLLQ
PKVVQCMQHVKSVVYDLMSSYGDKQNLIKLTVINEDYENVVAQHIYKKSYREALNMLQSL
KKPELFYQFAPVLMEETPTETVNALISQGAKLSPSKLLPAFLSCENDDKHASEITRYLEF
MLQNFNVKDKAIHNYLFTLYVETDKPALMRYLSRQGRDITMVNYDVHYALRLCRENGLSE
ACVTLSALLGLWEAALELSLQVDISLAKSVAAMPEDASLQKRLWLSVAEHIITKNQDIKE
AMQLLEECSLIKIEDILPFFSDVTTIDHFSEPICQSLEEYNNQIEELKLEMEDATKSAEC
VRNEIQSFRNRSVLVSVTDVCCVCDIALLLRPFYLFPCAHRFHTDCLLAQAQPILAPARR
NKLTDLQRQLAVLSNVELSTVTSSGLPLREVLRSEIDDIVASECVLCGEHMIASIDQPFI
ADQDWDRVMKEWE
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atgacatcgatttttgaccagtacgagcaggcatctcaagtatctcaaaaagttgttcca
gcttctgagcaaatgacttcatctggttacatcaatatgcagctagaagacaatacgccc
cttttttctaaacagaggatgaattttaatccttcagacttgataactcatgttgcagtt
gcaagtgactatttagttttagctatggccaatggaaaattgtttaggatggatttaaag
atgcctgatcaacaagaagaaattcaatacacaaagatcattcaaccaaattcaaaatta
actgcaatatttcttgatccactgggttaccacctactactagcctttgcagctagaaat
aaagatggtagcccagaattggtttatcttcatcgcaagagtactaaattgaagtctgtg
agtaaatcaaggaactatgaagtaacagaagttggttggaattatgagaatagatctaca
tcaagtacaggcccaatattacttggtacatctcaaggacacatactggagatggagcta
gaagctgagagtgataaaatgtttactgctagccagcaatattggagacagatttttgat
attggcaaaggtactgatacaccaattactggtatacaatttcacagagtgaacaacaca
agcaaatactttatttttgttaccacaccaactcgtctctatcagtttataggccatgcc
atgatatctgatgataaaccatccctacaatccattttccactcttatttgacaactcca
gaaactggttttcaagaaattccatccacattgaagtattcaaagctacagttctatttt
gataaaagcaatgaacctaaaacttttgcttggcttacagaaccaggaatattttttgga
cagctggatccttcatctcaacaaaactctaattccctatttacacaaggtgaactcatc
aattatcctactgataaaggtgatggaaaagaatcaactcctttgtcatttgtattaacc
gaatttcatgctttagttatgtactccgatggagttaagagtgtgtcacttctcaatcaa
gagcttgtctatgaagatcggtataattcagaagttcatggaaagctaaaaaacattgta
aaagattctgccagacgaaccatttgggccgttacggacaaagcagtgtttcgatataag
gttaatagagaagagagaaatgtctggcgtatttattccgataaagaacagtttgatctt
gctaagctgtattgccagaataacccggcttacatagacatcataaacgtcaaacaagcg
gacttgctattcacaaagggtgactatgaaaagagcgcagagatctttgcggaaactcaa
agcagttttgaaacaatatgcctcaaatttctagaagttgatcaaattaatgctttaaaa
gtatatctaagcaaacgattagatgccttaactgatgatgataaaacattactatctatg
atagttatttggatgactgaattgtatgtatcacagctagcgtctttgagacgctcagga
aaagaagattctcaagaataccatcaatttcagagtgatctagaggtatttcttcttcaa
ccaaaagtggtacaatgtatgcaacatgtgaaatcagttgtgtatgatctaatgtcctca
tatggggacaaacagaatctaatcaagctgaccgttattaatgaggattatgaaaatgta
gttgctcagcatatttataagaagtcatatcgggaagcgttgaatatgctgcaatctttg
aagaaacccgagttattttatcaatttgcacctgtattaatggaagagactccaacagag
acggtgaatgcgttgatatcgcaaggagcaaagttaagtccctctaaattgctacccgcg
tttttatcctgtgaaaatgatgacaagcacgcatcggagataactcgatatctagaattt
atgttgcagaacttcaacgtgaaggataaggcaatacataactatctattcacgttatac
gttgaaacggataaacccgctttgatgcggtatttgtcacgacagggacgggatatcact
atggtaaattatgacgtacattacgcattacgtctgtgtcgtgagaacggtttatcagag
gcgtgtgtcactttatcagctctactaggactgtgggaggccgcgctagaattgtctcta
caggttgatatatctctcgctaagtctgtagctgcgatgcccgaagatgctagcttgcag
aagagattgtggcttagtgtagctgaacacataataacgaagaaccaggatataaaagag
gcgatgcaattgttagaagaatgttctcttatcaagattgaggatatacttccgttcttc
agcgatgtcaccactattgatcactttagtgaacctatctgccagtcattagaggaatac
aacaatcaaatagaggaattgaagcttgaaatggaagatgccacaaaatccgcggaatgt
gttcgcaatgagatacaatcgttccggaatcgtagcgtactagtctcggtgacagacgta
tgctgcgtgtgcgacatcgcgttgttgttgcggcccttctatttgttcccgtgcgctcat
cgcttccatacggattgtcttcttgctcaagcgcagcccatacttgcacccgcgcgtcgc
aacaaattaacggatctccaacggcaactagcagtcttgtcaaacgttgaattgtcaaca
gtgacatctagcggtctccccttacgtgaagtacttaggagtgagatagacgacattgta
gctagtgaatgtgtgctctgtggagaacatatgatagccagcattgaccaaccattcatt
gcagatcaagattgggatcgggttatgaaggaatgggaatga
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