Pieris rapae (cabbage white): 111000175
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Entry
111000175 CDS
T05162
Name
(RefSeq) focadhesin isoform X1
KO
K27498
focadhesin
Organism
prap
Pieris rapae (cabbage white)
Brite
KEGG Orthology (KO) [BR:
prap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prap03019
]
111000175
Messenger RNA biogenesis [BR:
prap03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111000175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3730
Focadhesin
Motif
Other DBs
NCBI-GeneID:
111000175
NCBI-ProteinID:
XP_022125227
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Position
13:complement(8354360..8373233)
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AA seq
1192 aa
AA seq
DB search
MDEIEYKLKTNTSVLIVNAVDKLISTIKSKYKPAERPKFVLENEELKFLREKCSSPDPVV
SLTACQGLLALVELNVLEIGHTMSTVVSLLPTAHNFSAIISTMAGLLVLDLKSRLIPGQP
YKCQFSLRSPQHPFITILEKNKDIEDNVLAQMHALCTSHEYLVSSNSLELLRPVFLWLTS
NPQRPRGSSRVWQLLLSLPQSDAQSSLLLACLSSQQICNPKLLESSVCAYSAVTEAAIYQ
QRREYIVAFVPMLATICSQLLKHGRDPRPCYSLIDRCFSMDVPELKCVSGLTLIILADNL
TKTAALYLQELFNLCLNIISKYEYSTVCLNAFVGLSLQWLHLPSYLTTNALNTASKILEI
QQQEKTDNCLYIANLKSNKTFQNLVQTERHLQIYFKLLETWERLDNPDKLKSWFGVLCST
NDDLKVELLPFLVGLCLNKTLDEDVVVKVIQCIVQIVGVKKVVSVTILPVLVHKLADNRP
NVKLACLKGLPIMASTKENVPTIVAVLNKFKANKGVPTSLLIALYTSLAETQVRCFPYLQ
ELLVDTAMKPDDLKWEIDLAKALAVKRICEARASSHGLELVSVISSLLNRCTDKSGGVAT
SLALAALAALWRGAAVAPPGTWRALEPRLGRDTRPGVQVSLCKLLAEIPALRVSTAEYDK
LVSDAAKRLWVYVAEGISPVCEAACHALANYKIEDFKLKDIPEIYIRTVKLPPSYCKTPA
DAMRRPEDVLDYIPCEVWPELFKSNSSLTGVEYFVGKLIEREVRGFRSGVYMIEGREPLG
LSNLPPHSVLRGMTDCVRKQITSPTYDIQESVLLSMLSSLSREYPRPLPPFDISFLHDVW
HRGPLWRSKSVELAARQALTVPSAKRLLDNWLAGIQPGSSEETDIMLIFEYLPILARTMP
PNNLRHPVENCLAEAFSHKSDCFVNQLRLIRDCLECERIHEANRTWLCQAVETYFSLIND
DSPLWPEYVECSLSLSTKYLERMTSPSGWWEVSSDLLRKSMRTRSALAARTDTTAPLVWL
NESIDAHAQQILEQDYSLRCIMEALKVAKQDDPATKHWFLQLMARTQVAFNEMEDESSKL
YLCDVFMLSSIMLSGLWSFEPDIEAVVSSRTNRQTLLPAALASLLNRDAWKDCTLQMLEW
LCHTRDATQDEGTSRACQRALLALRHSELFITHKIWTRLEHHFGNMIPNLED
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaattgaatataaactaaaaacgaatactagtgttctcatagtaaatgctgta
gataagttgatatctacaataaaatccaagtataagccggctgagagaccaaaatttgtt
ttagagaatgaagaattaaagtttttgagagagaaatgttcttctccggatcctgttgtg
agccttactgcatgtcaaggtttactcgccttggtggaattgaacgtgctggaaataggg
catacaatgtcaactgtggtatcacttttgcctacagcacataacttctctgcaataata
tcaacaatggctggtcttttagtattagatttgaagtcacgtctcattcctgggcaacca
tataagtgccagttctctttacgctcaccacagcatccctttatcactatactggagaag
aataaagatatagaggacaatgtcttggctcaaatgcatgcattatgcacaagtcatgaa
tatttggtatcgtcaaacagccttgagctgttaaggccagtattcctctggttgaccagc
aatccacaaagacctagaggcagctctagagtttggcaattattgctaagtcttccacag
tcggatgcccagtcatccttgcttcttgcatgtctcagtagccaacagatatgtaatcca
aagttattagaaagttccgtatgtgcttactctgcagtgactgaagcggctatatatcaa
caaagaagggagtatatagtggcctttgtgccaatgcttgcaacaatatgcagtcaacta
ctcaaacatggtcgcgatcctcggccatgctacagtttaatagatcgctgtttttctatg
gacgtcccggagcttaaatgtgtgtctggacttacattgataatactcgcagacaatttg
acaaaaaccgcggccttatatttacaagaactgttcaacttgtgtctgaacataataagc
aaatacgaatactcaacagtatgccttaacgctttcgttggcctttccctacagtggctc
catctaccatcgtatctgacgacaaacgccctcaacacggcctcaaaaatcttggaaata
caacaacaggaaaaaacagacaactgcctttatatagctaatttaaaatccaacaaaaca
ttccaaaatttagtccaaacagaacggcatttgcaaatatatttcaagttattggaaaca
tgggaacgtctggataatccagataaattaaaatcgtggtttggtgtgttgtgtagtact
aatgatgacttgaaagtggagttgcttccgtttttggttggattgtgtttgaataaaact
ctcgatgaggatgtagtggtgaaagtgatacagtgtatagtgcaaatagtgggagttaag
aaggtggtatcggtgacaattttgccggttttggtgcacaaattggctgataatcggcct
aatgtcaaattggcctgtttgaagggtttgccgatcatggcttcaacaaaggaaaatgtt
ccaacaatagttgcggtattaaataagtttaaggccaataaaggcgtccctacgtcactg
ctaattgcgctgtatacgagtttagctgaaacgcaggtcagatgttttccatatcttcaa
gagcttttagttgataccgcaatgaaaccagacgatctcaaatgggaaattgatctcgca
aaagcacttgctgtcaaacggatttgtgaggcgcgcgcctcatcacatgggctggagcta
gtctccgtgatatcatcccttctcaaccgctgtacggataagtcgggcggtgtggcaacg
tcgctcgcattagcagctcttgcagcgctatggcgtggtgcggccgtggccccacctgga
acttggcgcgctctggaacccagacttgggagagacacgagaccaggtgtacaagttagc
ctgtgcaagcttctagctgaaattcccgccttacgtgtttctacggcggaatacgacaag
ttagtgagtgatgctgctaagcgattatgggtgtatgttgctgaaggcatctcgcccgta
tgtgaagccgcttgccacgcccttgctaactataaaattgaagatttcaagttaaaggat
attcctgagatttacatacgaacagtcaaactgccaccgtcgtattgcaagacccccgca
gatgcaatgcgtaggcccgaagacgttcttgactacataccttgtgaggtgtggccggag
ttatttaaatcaaactcctccctaactggagtggaatatttcgtgggaaaactaatagag
agggaagtcaggggattccgaagtggagtctacatgattgaaggacgggaacccctaggt
ttaagtaacctgccaccgcatagcgtgttaaggggtatgaccgactgtgtcaggaaacag
ataacatcgccgacctacgacatccaagaatccgtccttctatcgatgttgtcgtccctt
tctcgcgaatatcctcgtccgctgcccccatttgacatctctttcttgcatgacgtttgg
catcggggaccgttgtggcgctccaaaagtgttgagttagccgcgagacaggcgttaacc
gttccctcagccaaaaggctgttggacaactggttggcgggaatacagcctggaagtagt
gaggaaacagatataatgctaatttttgaatacctcccaatactggctcgtacaatgcca
ccgaataaccttcggcatccagtcgagaactgcttggctgaagctttttctcataagtca
gattgcttcgtaaatcaactgcgactgatcagagattgtttggaatgtgagagaatacat
gaagccaatagaacttggttgtgccaagctgtcgaaacatatttctcgctgatcaatgat
gatagcccgctatggccagaatacgtagaatgcagtctttccttatccacaaagtatttg
gagagaatgacatcccctagtggatggtgggaggtgtcaagcgatcttttacgcaaatct
atgcgcacgcgcagcgctttagcagctagaactgatacaactgccccacttgtatggctt
aacgagtctattgatgcgcatgcacagcaaatacttgaacaggattattccctccgatgt
ataatggaagctctaaaagtggccaaacaagatgaccccgcaacaaaacactggttctta
caactgatggctcgtactcaagtcgcttttaatgagatggaagatgaatcgtcaaagctt
tatctatgcgacgtatttatgctttcatcgatcatgctcagcggcctttggtccttcgag
ccggatattgaagctgtagtatctagccggacaaatagacaaactttattgcctgcagct
ttagcttcacttctgaatagagatgcatggaaggattgcaccctacagatgttagagtgg
ctatgtcacacccgtgatgcaacgcaagatgagggtacttcgcgcgcctgtcaaagggcc
ttattagcattaaggcattcggaactatttatcacgcataagatatggaccagactagaa
caccactttggaaatatgatacccaatctcgaagattaa
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