Pieris rapae (cabbage white): 111000332
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Entry
111000332 CDS
T05162
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
prap
Pieris rapae (cabbage white)
Pathway
prap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111000332
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prap03019
]
111000332
03012 Translation factors [BR:
prap03012
]
111000332
Enzymes [BR:
prap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111000332
Messenger RNA biogenesis [BR:
prap03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111000332
Translation factors [BR:
prap03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
111000332
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
HA2_N
AAA_19
OB_NTP_bind
HA2_C
AAA_11
nSTAND3
AAA_22
NPHP3_N
Rad17
AAA_34
ABC_tran
RsgA_GTPase
nSTAND1
Motif
Other DBs
NCBI-GeneID:
111000332
NCBI-ProteinID:
XP_022125421
LinkDB
All DBs
Position
21:5661632..5673312
Genome browser
AA seq
1112 aa
AA seq
DB search
MSNSRGMRSWYSHGERSFQGNRGRHTRSRPPGLKGKEIGLYYKNLYKKNKKKDIVINLTI
PSAIISAINKNLIFIETVAKTENIELSFTNIFEPRMKPKTDTSKRKESPPEEYDIADKRY
KEGTNISLKNVLVPNFKTDAYLNENEKILLNVNDETHNEVRDEHISLNNICIKSEPSSLS
TLNDIPIKNEPSSVSMLDNIPIKKEPSSLPIPDYISFKNENLMNDCLNSEKIGLRGGHYK
YGYQDIITGTFDEKLAEVLTLGIQIASNNDGVRKLNNDYYTEYNEMLGRLSYNKMLQFRE
TLPAYKKKENILDSIDKSQVLVISGETGCGKSTQIPQLILDRAMKNKTGANVKILVTQPR
RIAASTLAMRVAKERSETLGNSVGYSVRLDKVESRTRGSIMFCTTGVLLSELESNQALSN
FSHIILDEVHERDTHVDLAMAMLKQILKKRKDLKLILMSATLDAEVLSTYFDDCPVVYIE
GLAYPVTDVYLEDILKLTDYQIPKKKEKKQKWKKHEKKGKSKANEMETDIQYKAEIGPWL
ESIKNNIPRDVYKTLQDPQIEELNIDLIVELLKYICKGEPGAILVFLPGIGDITKLMQCM
EINGFSNGKYEIYPLHSKLASLEQRKIFMKPPIGVRKIILATNIAETSITIDDIVYVVDS
GRIKVSGLNVDENISTLKTEWVSKANLHQRRGRAGRCQPGICYYLLTSYRAGKLADRLLP
ELQRSNLLEPVLMLKKLRLGLANTAFQMVPSPPAEKTVEWAVRHLQKCGALDKTETLTPL
GWHLARLPVHPAAGKLLLFGALFGCLDRAASVAAVWSFKDPFLLVIGKEFEVKSVKRCLA
MGEPSDHVAMSEAIMQWESCSYRDRRSFAFDNFLSNNTLELLIDMKKQLGENLKQMGFLS
SSNLQAQWENRNWNNISLFKAIVAASLYPNVAQVRWTNLKSYKKPPSIIAYCPEDGKVKV
HPSSVMATEYGMQRHEKICTNPGANWLVYWLKQKSSDLFLIDVNLVYTLPLLFFGEFSVK
EDLENPEDCLISVTKNINVRCNKNSANTILKLRILLDQVLANKVMETCPRSVKQSQFEDE
VLKTVIELITAEDEQANYIDDDGSEASDDYRN
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atgtctaattctcgtggaatgagaagttggtatagtcatggtgagagaagttttcaaggc
aatagagggcggcatacaagaagtcgaccacctggtttgaaaggcaaagaaattggtctc
tattataaaaacctttataaaaaaaataaaaaaaaggacatagtgataaatcttacaatt
ccatctgctataatatctgctataaataaaaacttaatattcatagaaactgttgctaaa
actgaaaatatagaattgtcattcacaaatatatttgaaccccgtatgaaaccaaaaact
gacacaagtaaaagaaaagaaagtcctcctgaagagtatgatattgctgataagagatat
aaagaaggtactaatatttcccttaaaaatgttttggtacctaatttcaagactgatgca
tatttgaatgagaatgaaaagattttactaaatgtaaatgatgagacacataatgaggtt
agggatgaacacatttcattaaataatatatgtattaaaagtgaacccagttcattaagc
acactgaatgatatacctattaaaaatgagccaagttcagtaagtatgctagataacata
cctattaaaaaagaacccagttcattacctattcctgattacatatcttttaaaaatgaa
aatctaatgaatgattgtttgaactctgaaaagatagggttaagaggaggacattataaa
tatgggtatcaagatatcattactggaacatttgatgagaaattagcagaagttttaaca
ctaggtattcaaatagcttctaacaatgatggtgttagaaaattaaacaatgattactat
acagaatacaatgaaatgctaggaaggttgtcttataataaaatgttacaatttcgtgaa
accttacctgcttataagaaaaaagaaaatatattagacagtattgataaaagtcaagta
ctagtgataagtggtgaaactggctgtggaaaatctacacagattcctcaacttatatta
gacagagctatgaaaaataagacgggggcaaatgtaaaaatacttgtcactcaaccaaga
agaattgcggcatctacattagccatgagagttgctaaagaaagatctgaaacacttgga
aattctgtaggatatagtgtccgattagataaggtagagtcgaggactcgtggtagtatt
atgttctgtaccactggagtgctattatccgaacttgagagtaatcaagcattgtcaaac
tttagtcatataatactggatgaggtgcatgaacgggatactcatgtagatttggctatg
gccatgctgaaacagatactaaaaaaacgaaaagacttaaaactgatacttatgagtgct
acgttagatgcagaagtattgtcaacgtattttgacgattgtcctgtagtgtacatagaa
gggcttgcttaccccgttacagacgtttatctagaagatattctgaagctaaccgactac
cagataccgaagaaaaaggaaaagaagcaaaaatggaaaaaacatgaaaagaaaggcaaa
agtaaggcgaatgaaatggagacggatattcaatataaggctgaaattggaccatggctg
gaatcaataaaaaacaatataccacgtgatgtatacaaaacactccaagatccgcaaata
gaagaattaaatatagacttaatagttgaactcctaaaatacatatgcaagggtgagcca
ggagcaatacttgtgttcctcccagggattggggatataactaaattaatgcaatgtatg
gaaataaacgggttttcgaacggaaaatacgaaatttatccgttacattcaaaattagcg
tcactagaacagcgcaagatatttatgaagccgccgattggtgttcgtaagataatattg
gccactaacatagctgaaacgtcgataacaattgatgatatagtatatgttgttgattct
gggaggattaaagttagcggtttgaatgttgatgagaatatttctacgctgaaaactgaa
tgggtgtctaaagctaatttacatcagaggcgtggtcgagcaggtcgttgccaacctggc
atttgctattacctattaacgtcataccgcgcgggaaaacttgccgatcggcttttacca
gagctacaaaggagtaatttattagaaccggtgttgatgttgaagaaattaagactcggt
ttggccaatacggcatttcagatggtcccgtctccgcccgctgagaaaacagtggagtgg
gctgtgaggcacttgcagaaatgtggtgccttggacaaaacagagaccttgacaccattg
ggatggcatttagcaagacttccagttcatcccgcagctggaaaattattattgttcgga
gctctatttgggtgcttggatagagcagccagtgttgcagcagtatggagcttcaaagat
ccatttctacttgttatcggcaaagaattcgaagttaaatctgtaaagcggtgcctggcg
atgggtgagccgagcgaccatgtagcgatgtctgaagcgataatgcaatgggaaagttgt
tcatacagagaccgtcgttccttcgcctttgataatttcctttcaaacaacacattggaa
ctgctaatcgatatgaagaaacagctgggtgaaaatctcaagcaaatgggatttctttcg
agtagtaacctccaggctcaatgggagaacaggaattggaataatattagccttttcaaa
gcaattgtagctgcatcgttatatccaaatgtagcacaagtgcgttggaccaatttaaaa
agctacaagaaaccaccatctattatcgcatattgccctgaagatggcaaagtcaaggtc
catcccagtagcgttatggctactgaatatggtatgcaaaggcacgaaaaaatttgcact
aaccccggggctaactggttggtctattggctgaagcaaaaatcctctgacctcttcctt
attgatgtcaacctggtatatacactgccgctattattctttggagaatttagtgttaaa
gaagatcttgaaaatccagaggattgccttatatctgtaaccaaaaatataaacgtacga
tgcaacaaaaattcggcgaacacaatactgaagttgagaattctacttgaccaagtactg
gcgaacaaagttatggaaacatgcccacgttctgtgaaacaaagccaattcgaagacgag
gttttaaaaaccgtgattgaacttattacagcggaggatgaacaagctaattacattgat
gatgatggatcagaagcgtcagacgattaccggaattaa
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