Pieris rapae (cabbage white): 111001570
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Entry
111001570 CDS
T05162
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
prap
Pieris rapae (cabbage white)
Pathway
prap03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
prap00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111001570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prap03019
]
111001570
03041 Spliceosome [BR:
prap03041
]
111001570
Messenger RNA biogenesis [BR:
prap03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
111001570
Spliceosome [BR:
prap03041
]
Complex B
Other components
Prp19-related factors
111001570
Complex C
111001570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_8
TPR_12
TPR_15
NRDE-2
DHR-2_Lobe_A
PPR
ARM_TT21
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
111001570
NCBI-ProteinID:
XP_022127198
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Position
12:complement(6985790..6988845)
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AA seq
843 aa
AA seq
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MPLLDGKEIEIFFSEEDLPYEEEILRNPFSVKHWLRYIEHKKGAPKHEINLIYERALKEL
PGSFKLWYNYLKLRRSQIRGKCIIDPLYEDVNNCFERSLVFMHKMPRIWMDYCTFLTDQY
KITMTRKAFDSALRALPITQHHRIWPLYLGFLKKHDIPETAVRVFRRYLKLCPEDAEEYI
DYLISIDKLDEAAVKLAQIVNNENFQSKHGKSNHQLWNELCELISKNPDKIHTLNVDAII
RGGLRRYTDQLGHLWNSIADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEE
LSLSKKMEEVAKNTNPSEDEDIDLELRLARFEYLMERRLLLLNSVLLRQNPHNVAEWHKR
VKLYEGKPHEIIDTYTEAVQTVDPKLAVGKLHTLWVGFAKFYETNDQIEDARLIFEKATQ
VIFVKVDDLASVWCEWAEMEIRHENYEEALKLMQRATVLPSRKVAYHDENETVQMRLYKS
LKVWSMYADLEESFGTYKSCKAVYDHIIDLKIATPQIIINYGLFLEEHNYFEEAFRAYEK
GIALFKWPNVYDIWNTYLTKFLKRYGGSKLERARDLFEQCLEHCPPEFAKSIFLLYAKLE
EEHGLARHAMSVYERATTAVLPEQMFEMFNIYIKKAAEIYGVPKTRQIYEKAIETLAEGN
SREMCVRFAEMETRLGEIDRARAIYAHCSQMCDPRITADFWNTWKEFEVRHGNEDTMREM
LRIKRSVQATYNTQVNMMSAQMLSSAAQAAGTVSDLAPGMKDGMRMLEAKAAEMAVQSKG
NIMFVRGETQGLKDSSDKVVNPDEIDIDEASENSEEEDESEIAPVEKKEIPAAVFGGLLP
EKE
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atgcctttattggatggaaaggaaatagaaatcttctttagtgaagaagatctgccatat
gaggaagaaatattgagaaaccctttttctgttaaacattggctgcgatatattgaacat
aaaaaaggagctcccaaacacgaaataaatcttatttatgaacgagctcttaaagaatta
ccaggatcctttaaattatggtataactatctcaagttaagaaggtcccaaataagggga
aaatgtataatagatccattatatgaagatgttaacaattgttttgaaagatccttggtc
tttatgcataaaatgcctaggatatggatggactactgcacattcttaacagaccagtat
aaaataaccatgacaagaaaggcatttgatagtgcattaagagcattaccaataactcag
catcatagaatttggcctctgtacttgggttttttaaagaaacatgatattccagaaact
gctgtgcgtgtttttagaagatacttaaagctctgtccagaagatgctgaagaatacatt
gattatttgatatcaattgataaattagatgaagcagctgttaaacttgctcaaattgtt
aataatgaaaactttcagtcaaaacatggtaaatctaatcatcagctatggaatgaatta
tgtgaattaatatctaaaaatcctgataaaatacatacactaaatgtagatgctattata
agagggggtttgcgacgctatactgaccagttaggacatttatggaattctatagctgac
tactatgtaagaagtgggctctttgaaagagcaagggatatttatgaggaagctattcaa
accgtaactacagtccgtgacttcacccaagtttttgatgcttatgctcaatttgaagaa
cttagtcttagtaagaaaatggaagaggttgctaaaaataccaatcctagtgaagatgaa
gatatagacttagaacttaggctggcaagatttgaatatttgatggaaagaagattgctg
ttacttaattcagttttgttaaggcaaaatccacataatgttgcagaatggcataaaaga
gtaaagttgtatgaagggaaacctcacgaaattattgacacatacacagaagctgttcaa
actgttgaccctaaattggctgttggaaagttgcatacattgtgggtgggttttgcaaaa
ttctatgaaactaatgatcaaatagaagatgcaagattaatttttgaaaaagcaacacaa
gtcatttttgtaaaagtagatgatcttgcttctgtttggtgtgaatgggcagaaatggag
ataagacatgagaactatgaagaagctcttaaattaatgcaaagagcaactgttctgcct
agtagaaaagttgcctaccatgatgaaaatgaaacagttcaaatgcgtctatataaatct
cttaaagtatggtccatgtatgcagatttagaagaaagctttggcacatacaagtcctgc
aaggctgtctacgatcacatcattgatttaaaaatagcaacaccacagattataataaac
tatggcttgtttctagaagaacataactactttgaagaggccttcagagcttatgaaaaa
ggaattgcactgtttaaatggcctaatgtgtatgacatttggaatacatatttaactaag
tttttaaagagatatggaggaagtaagcttgaaagagctagagatctgtttgaacaatgt
ttagaacattgtccacctgaatttgcaaaatccatatttttactatatgcaaagttagaa
gaagaacatgggttagcaagacatgctatgtcagtatatgagcgtgctacaactgctgtc
ttaccagagcagatgtttgaaatgtttaacatttatataaagaaagctgctgaaatttac
ggtgttccaaaaacacgccaaatatatgaaaaagctatagaaacattagctgaaggaaac
tcgagagaaatgtgtgtacgctttgcagaaatggaaacccgccttggtgaaatagataga
gctagagcaatctatgcccactgtagtcaaatgtgtgatcctaggattacagcagacttc
tggaacacttggaaagagtttgaagttagacatggtaacgaagatactatgcgtgaaatg
ttaagaataaagagaagtgtgcaagccacatacaatacacaggtcaatatgatgtctgca
caaatgctaagttctgcagcacaagcggcaggcacagtgtctgatttagcaccaggaatg
aaagatggtatgagaatgttagaagctaaagcagcagaaatggcagttcaaagtaaagga
aatattatgtttgttagaggagaaacccaaggtcttaaagatagttccgataaagttgtg
aaccctgatgaaattgacattgatgaggcatcagaaaacagtgaagaagaagatgaaagt
gaaattgcaccagttgaaaagaaagaaattccagctgcagtttttggtggtctgttgcca
gaaaaggaataa
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