Pieris rapae (cabbage white): 111002950
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Entry
111002950 CDS
T05162
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
prap
Pieris rapae (cabbage white)
Pathway
prap03013
Nucleocytoplasmic transport
prap03015
mRNA surveillance pathway
prap03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
prap00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111002950
09122 Translation
03013 Nucleocytoplasmic transport
111002950
03015 mRNA surveillance pathway
111002950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prap03019
]
111002950
03041 Spliceosome [BR:
prap03041
]
111002950
Enzymes [BR:
prap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111002950
Messenger RNA biogenesis [BR:
prap03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
111002950
Spliceosome [BR:
prap03041
]
Complex C
Other components
EJC/TREX
111002950
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
111002950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
111002950
NCBI-ProteinID:
XP_022128947
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Position
3:complement(3708315..3709870)
Genome browser
AA seq
425 aa
AA seq
DB search
MADNDDLLDYEDEEQADQQTADGATEAAPKKEVKGSYVSIHSSGFRDFLLKPEILRAIVD
CGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSENHVYVLVMCHT
RELAFQISKEYERFSKYMAGVKVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILALVNS
KKLNLKHLKHFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKF
MQDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCIA
LAQLLTDQNFPAIGIHRNMSQDERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNY
DMPEDSDTYLHRVARAGRFGTKGLAITMVSDENDAKILNEVQDRFDVNITELPEEIELST
YIEGR
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggcagataacgacgatcttctcgactacgaagacgaagagcaggcagatcagcaaaca
gccgacggagcaaccgaagcggcgccaaaaaaagaggttaaagggtcctatgtatctatt
cacagttctggcttcagagatttcctgctaaaaccggaaattttacgagctatagtagat
tgcggatttgaacatccgtctgaagtgcaacatgagtgtattccccaggccgttcttggt
atggacatcttgtgccaagcaaaatccggtatgggcaagacggctgtgtttgtattagca
acgctgcaacaactcgaaccatcagagaatcatgtctatgttctcgttatgtgtcacacc
agggaactggcattccagatcagcaaagagtatgaacgtttttctaaatacatggctgga
gttaaagtgtcagtattttttggtggtatgccaattcaaaaagatgaagaagtgcttaaa
actgcttgccctcatatagttgtgggaactcctggacgaattcttgctttagtcaatagc
aagaagctgaatttaaaacatttaaaacacttcattcttgatgaatgtgataagatgttg
gagtctcttgacatgagacgagatgttcaggagatatttagaaatactcctcatggaaag
caagttatgatgttttcagctactctaagtaaagagatacgtcctgtgtgcaagaaattc
atgcaggatcctatggaagtgtatgttgatgatgaagctaaactcacactgcatgggctt
cagcaacattatgtcaaacttaaggagaatgagaagaacaagaaactctttgaattactt
gatgttttagagtttaatcaagttgtaatttttgtaaaatctgtacaaagatgtattgca
ttagcacagttgcttactgatcaaaatttcccagctattggaattcacagaaacatgtct
caagatgaacgtctctctcgctaccagcaatttaaagacttccagaaaaggatattagtg
gcaacaaatctatttggtcgaggaatggatattgaacgagtaaatattgtgttcaattat
gacatgcctgaagattctgatacatacttacatagagtggcaagggctggtcgatttggt
acaaaaggcttggcaataactatggtttctgatgaaaatgatgctaagatccttaatgaa
gttcaagatcgttttgatgttaatatcaccgaattaccagaggagatagaactgtcaact
tacatagagggacgataa
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