Pieris rapae (cabbage white): 111003248
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Entry
111003248 CDS
T05162
Name
(RefSeq) 3'-5' RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
prap
Pieris rapae (cabbage white)
Brite
KEGG Orthology (KO) [BR:
prap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
prap03041
]
111003248
Enzymes [BR:
prap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111003248
Spliceosome [BR:
prap03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
111003248
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
HA2_C
R3H
OB_NTP_bind
Helicase_C
Ank_2
Ank
DEAD
Ank_4
AAA_19
Ank_5
AAA_22
nSTAND3
Ank_3
AAA_14
HA2_N
T2SSE
SRP54
ATPase_2
UvrD-helicase
AAA_25
PhoH
Cas3-like_C_2
Rad17
AAA_30
Zeta_toxin
Motif
Other DBs
NCBI-GeneID:
111003248
NCBI-ProteinID:
XP_045484287
LinkDB
All DBs
Position
5:3984699..3997855
Genome browser
AA seq
1330 aa
AA seq
DB search
MSSKRGKRNIGNKHFPIAESVSIALKIQLDKFLSDENETELKFPSFLSAQERGFIHETVA
KLGLKSKSRGKGVNRYITIYKRIGSTIIQNDAKLILDSNMRCSITELFNAFPITSKEKED
LSCCPEKERSPQLAHKSMGQLNNGVAQVPSTSYNPDLIKFREKLPVYEQRHELINAINSN
QVIIVAGATGCGKTTQLPQLVLEHCQEMKQPVRIYCTQPRRISAVSVAERVAYERMEKIG
QSIGYQIRLESRVSPRTVLHYCTNGVLLRTLMAGDEALTGVTHVFVDEVHERDKFSDFLL
IALRDALRTKDLKVILMSATMDTQIFSRYFNGCPVISIPGRLHDVQRHYLEDVLKLTKYT
NKKMSQLERELRGKLKTGQSYWSHLEGQKQSDVVEESGSKEEKENLDPAMQADMDEFLDE
CFNEGSLDSFSQVLYMILSEGVSVDARHSVCGRTALHAAAARGLTQTAQQILRLGADPTL
KDKNGKTAYDYAVDGGHPECAKALVSFNQIEEPKSNEQEESAADNFLLDVYHHSFSEELI
DHDLMLALVKHIHLNMAKGSILIFLPGYDDIVTLRDMIQSSTEMNALKYQIFTLHSNMQT
LDQKKVFNPLPNARKIIISTNIAETSITIDDVVYVVDSCKVKEKYYESNGGVCSLQCVWT
SRACCQQRAGRAGRTKPGHCFHMCSKRRFKTLPLNSVPEILRVPLQELCLHTKLLAPGNT
PIADFLSKALEPPSFLAVRNAVTLLKTVGALTPMEDLTEIGQHLLDLTVEPKLGKMLLYA
CVMKCLDPILTIVCSLSNKEPFQISMNPENRKKGSLARKEFAADSYSDHMALLRAFQAWQ
SARANGTEKAFCAKNLICGATMEMIVGYRSQLLAQLRALGLVKARGSGDIKDVNVNSEKW
HVVKAVLVSGLYPSIARVDRDSCTLRTSKEVKVAFHPSSTLHRGGGVSGSQKSVQSLPTD
WVVFEEISRVGRFCFIRCNTLVTPLTVALFSGPLRLPSGALTQRANPPGLSSDSDSEADE
NNSSPDTAVLTLDDWMAFTADASDAISVYYLRQKLCALVIRRMSNPGKPMSPLDEQILNA
VVHVLGAEEKNVGLHQPAGIGQRPKPLTVESPMWRREDEQFNRHEQKYYPQYQNDFANSF
YQGYGYRNGQRPGWRNDGMPQGFSSQSFSGPKSPMSPNGKTLLANIEKYSENGESNSRYF
IVKADDLHSVEMAQASGSYPFTQNTIKKLQKAKQEGSRVIMIFSCAGASKITGAAALGEA
ASPLDWISNNHIPFHMLRHITNGLAGGARVTGARDGTELCSTSGRGLLAALQSRRRHNPP
RPIQKQPNDQ
NT seq
3993 nt
NT seq
+upstream
nt +downstream
nt
atgagttcgaaaaggggtaaacgtaacatagggaataagcattttcctatagctgaatct
gtcagcatagcattaaaaatacaattggataagtttcttagtgatgagaatgagaccgaa
cttaaatttccgtcttttttgtctgcccaagaaagaggcttcattcatgagaccgtcgca
aaattaggtctcaaatcaaagtcacgcgggaaaggtgtcaaccgctacataacaatatat
aaaagaattggttcaacaataatacaaaatgatgccaaattgattttagactctaatatg
agatgtagtatcactgagttgtttaatgcatttcctatcacaagtaaggaaaaggaagat
cttagttgctgtccagagaaggagcggagtccacaattagctcataaaagtatgggacaa
ttgaataatggtgttgctcaagttccaagcacatcttataatcctgacttgattaaattt
agagaaaaattaccagtttatgaacagagacatgagctaataaatgcaattaactctaat
caggtgataattgttgcgggagccacaggatgtggcaaaacaacccaactaccacagcta
gtgttggagcactgtcaggagatgaagcagcctgtcaggatttactgcacacagcccaga
cgcatatcagctgtttctgttgctgagcgggtggcttacgagcgtatggagaagatagga
caatctattggttaccaaattcgtcttgagtctcgcgtaagcccgcgtacggtgttgcat
tattgcactaatggcgtcttgcttaggactttgatggcgggtgatgaagcccttactggg
gtgacgcacgtattcgtagacgaggttcacgagcgagataagtttagtgactttctgctc
atcgcattacgagacgctttgcgcactaaagatttaaaagtcattctcatgtctgcaact
atggacacccagatattctccaggtattttaatggatgtccagtgataagtatacctggg
cgtttacacgacgttcaaagacattatttagaagatgtcttaaagttgaccaaatacacc
aacaagaagatgtcacaactagaacgtgagcttagagggaagcttaaaactggacaaagt
tactggtcgcatcttgagggacaaaagcaaagtgatgtagtagaagagagtggtagtaaa
gaggaaaaagagaaccttgatccagcaatgcaagctgatatggatgaatttttagatgag
tgcttcaatgagggtagtttggactcgttcagccaagtgctgtacatgattctatcagaa
ggtgtgagcgtagatgcgcgccactccgtctgtggaaggacggctcttcacgctgccgct
gcaaggggtctgactcaaactgcgcagcagatattgaggctcggtgctgacccaacatta
aaagataaaaatggtaaaactgcctatgactacgctgtagatggcggccacccagaatgt
gccaaagccctcgtcagttttaaccaaatcgaggaacccaaatccaacgaacaagaagag
tcggcggcggacaacttccttttagatgtctaccatcactccttctcagaggagctcata
gaccacgatcttatgttggcgttagtcaaacacatccaccttaacatggcgaaagggagc
atactaatcttcctaccgggctacgacgacatcgttactctgcgagacatgatccaaagc
agcacagaaatgaacgctttaaaatatcaaatattcaccttgcacagtaacatgcagaca
ttggaccagaaaaaagtcttcaacccgctgccgaatgcgcggaaaattattatttcaaca
aatatagcagaaacttcaattacgatagacgatgtcgtgtacgtcgtggactcgtgtaaa
gtcaaagaaaagtattatgaatccaatggcggtgtctgttccctacaatgcgtgtggacc
tccagggcgtgttgccagcagagggccggaagagcgggacggaccaagccaggccattgc
ttccacatgtgctccaaacgacgcttcaaaactctacccctcaactcggtaccggagatt
cttagggttcctctacaggagctttgcctccacaccaaactgttggcgcctggaaatact
cctatcgcggatttcttatcgaaggccttggagccgccttcatttttagccgtgaggaat
gccgtgactcttctcaagactgtcggtgctcttactcctatggaagatttgacggaaatc
ggtcagcatttattggatttgacggtcgagccaaagttagggaaaatgttgctctacgcg
tgcgtcatgaaatgtttagaccctatactgaccattgtttgcagtttgtcgaataaagag
ccgttccagatatcgatgaacccagaaaataggaagaagggaagcttagcgagaaaagaa
ttcgccgcagacagctattccgaccatatggcgttattgagggcattccaagcgtggcag
tctgcgagggctaacggcactgagaaggcgttttgtgccaaaaatctcatttgcggagct
actatggaaatgattgtcggttatcggtcgcagttactggcacagttaagagcactaggt
cttgtcaaagcgcgaggttcgggtgacattaaggacgtcaacgtgaactctgaaaagtgg
cacgtagtgaaagcggttctggttagcggactgtacccatccatcgcgagagtagacaga
gattcctgtacgctgagaacttccaaagaagtcaaagtcgcatttcatcccagttccact
ttacatagaggtggcggagtgagtggttctcaaaaatcagtacaaagtttaccaacggat
tgggtagtgttcgaagaaatttctcgtgtgggtagattttgttttatccgatgcaacacg
ttggtgactccacttacggtcgctttgtttagtgggcctctaagattgccctctggcgct
ttgacgcaaagagccaatccgccaggattgtcgagcgattcagatagcgaggcagacgag
aataactcgtccccagatactgcagttctgactttagatgattggatggccttcacagcc
gacgcatccgatgccataagcgtttattacttgcgtcagaaactttgtgcgctagtcatt
cgccgaatgtccaacccagggaaaccgatgtcgcctctcgatgagcaaatcttgaacgcg
gtcgtccacgtcttgggagctgaagagaaaaacgtgggcttacatcaacccgccggcata
ggccagcggccgaaaccgctgactgtcgaatcgccgatgtggcggcgggaggacgaacag
tttaacaggcacgagcaaaaatactacccgcagtaccagaacgactttgcgaatagtttc
tatcagggctacggttatagaaatggccaaagacctggctggaggaatgatggaatgcca
cagggattctcctctcagtcgtttagtgggccaaagagtcccatgtctccaaacggaaag
accctgctagctaatatagagaaatactcagaaaacggtgaaagtaattcgaggtacttt
atagtaaaggcagacgatttgcacagtgtggaaatggcacaagcgagtggcagctacccc
tttacgcaaaacactatcaagaaactgcaaaaggcaaaacaggagggtagtcgcgtgata
atgatattctcgtgtgcgggtgcttcgaagataacaggtgcggcggcccttggagaggca
gcctcgcctttagactggatcagcaataaccacataccctttcatatgctccggcacata
acaaatggtttagctggcggtgcccgagtaactggcgctcgcgatggcacggaactctgc
tcgacaagcggacgcggactacttgccgctttgcaaagccgtaggagacacaatccaccg
aggcccatacagaaacaacctaacgaccaatga
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