Pieris rapae (cabbage white): 111003836
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Entry
111003836 CDS
T05162
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
prap
Pieris rapae (cabbage white)
Pathway
prap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111003836
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prap03019
]
111003836
03041 Spliceosome [BR:
prap03041
]
111003836
03009 Ribosome biogenesis [BR:
prap03009
]
111003836
03016 Transfer RNA biogenesis [BR:
prap03016
]
111003836
Enzymes [BR:
prap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111003836
Messenger RNA biogenesis [BR:
prap03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
111003836
Spliceosome [BR:
prap03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
111003836
Complex C
U4/U6.U5 tri-SnRNP related factors
111003836
Ribosome biogenesis [BR:
prap03009
]
Eukaryotic type
Pre-60S particles
Helicases
111003836
Transfer RNA biogenesis [BR:
prap03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
111003836
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
ATPase_2
Motif
Other DBs
NCBI-GeneID:
111003836
NCBI-ProteinID:
XP_022130250
LinkDB
All DBs
Position
1:complement(7819590..7838629)
Genome browser
AA seq
1032 aa
AA seq
DB search
MSELKSLFDCFEEPPSNEICLQVPSVDNLETSTGETIQKKRPHEQVEYADTEVQPEDNKK
HKTDEDESDLLADLNLDLANSRIVIHTLETHEGCTHEVAVPPNHEYIPLVPLSSTPVKQY
SFILDPFQKEAIMCIDNLQSVLVSAHTSAGKTVVAEYAIALSLKKKQRVIYTTPIKALSN
QKYREFSEEFIDVGLITGDVTINPTASCLIMTTEILRNMLYRGSEIMREVGWVVFDEIHY
MRDKERGVVWEETLILLPDNVHYVFLSATIPNARQFAEWVCRLHSQPCHVVYTEYRPTPL
QHYIFPAGGDGIHLVVDEKGQFKEGNFNTAMTVLSNAGDAGKGDQRGRRGGFKGGNNNNT
NIFNIVKMIMERNFAPVIIFSFSKKDCELYAMQMAKLDFNTIEEKKLVDEVFNNAMDVLS
EEDRKLPQVENVIPLLRRGIGIHHGGLLPILKETIEILFGLGLIKALFATETFAMGLNMP
ARTVVFTNCQKFDGKDFRFITSGEYIQMSGRAGRRGLDDKGIVILMIDQKVAPNTVKSMV
QGKADPINSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNQAAIPDIIEKVKIKQKEY
DALGIEQEHSIASYCALRSQLDLLGAQFRSFITRPEYLKPFLQPGRLVKIKTEKHEYDWG
IIVNFRQKTKGKKGKHENPLTAETVILVDTLLHVKKSSGDDPDTNVPCPPGETGDVEVVP
VLHTLINQISSLRVYYPKDLRPADSRKSVLKTINEVKKRFPDGPPLLNPIKDMKIDEPVF
KECVDKIKLYEERLFAHPLHKDKNRGALTAAFEKKQEIFEELKQAKGELKKAKSILQMDD
LKKRKRVLRRMGYCTMSDVIELKGRIACELSSADELLLTELIFNGVFNSLTPEQCAALVS
CFVCDENSTQASATGEELKGVLRQLQEYARRIAKISIEAHMDLVEDEYVGKFKCTIMDVV
LAWAKGANFLQICKMTDVFEGSIIRCMRRLEEVLRQLCQAAINIGNVDLENKFSEAIKLL
KRDIVFAASLYM
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atgtccgagttaaagtctttatttgactgtttcgaagagccaccttctaatgaaatatgc
ttacaagttcctagtgttgacaatctggagacatcaacaggtgaaacaatccaaaaaaag
agacctcacgaacaagttgaatatgcagatacagaagttcaaccagaggataataagaaa
cataaaactgatgaagatgagagtgatttattagcagatctaaacttagatttagctaat
tctcgaatagttattcatacccttgaaacacatgaaggatgcactcatgaagtggcagtg
cctccaaatcatgaatatatacccctggttccattatctagtactccagttaaacagtat
agtttcatattggatccatttcaaaaggaagctattatgtgcattgataatctgcaatct
gtacttgtttctgcacacacatcagctggaaaaacagttgttgccgagtatgccatagca
ttatccctgaagaaaaaacaaagagttatatacacaacacccataaaagctttatcaaat
cagaaatacagagagttttcagaggaatttattgatgttggtttaattactggagatgta
acaatcaatcctactgcatcctgtcttattatgactactgagattttgcggaatatgtta
tacagaggatcagaaatcatgcgtgaggttggttgggttgtgtttgatgaaattcactac
atgagagataaagaaagaggtgttgtgtgggaagaaactctgattcttctccctgacaat
gttcactacgtgtttctatctgctactatccccaacgcacgtcaattcgctgaatgggtg
tgtcgtcttcattcgcaaccctgccacgtggtctacaccgaatatcggcccacccctcta
cagcactatatattcccagctggtggtgacggaatccatctagttgtcgatgagaagggt
caattcaaagaaggcaatttcaacacagccatgacagttctaagtaacgccggagatgcg
ggaaagggtgaccagcgcgggcgtcgcggaggcttcaaagggggcaataataataatact
aatattttcaatattgtcaaaatgataatggagaggaattttgccccagtaatcattttc
agcttcagtaagaaggattgtgagctatatgcgatgcaaatggctaaattggacttcaat
accattgaagaaaagaagttggtcgatgaggtgttcaataatgcaatggatgtgttatct
gaggaggacaggaaactgccgcaagttgagaatgtcattccgttgctgagacgcggtatc
ggaatacatcacggtggtctgctgcccatacttaaggagaccattgagattcttttcgga
ttaggacttattaaggcactatttgcaacagagactttcgctatgggcctcaacatgccg
gcgagaaccgttgttttcaccaattgccagaaattcgatggcaaagatttcagatttata
acatcaggcgagtatattcaaatgtctggacgtgccgggcgtcgaggattggacgacaag
ggaattgttattttgatgattgaccaaaaagtggctcctaacacagtgaagtccatggtt
cagggaaaagctgatcctattaattcggccttccacctcacttataatatggtgttaaat
ctattgcgagtggaagaaataaatcctgaatatatgttggaaagaagtttcttccaattt
caaaaccaggccgctattccagatattatagagaaggttaaaataaaacagaaagaatat
gacgcgttaggcatagagcaggaacactctatagcgtcgtattgtgctcttcgttcacaa
ttagatcttttgggagctcaattccgctcttttatcacacgtcctgaataccttaagcca
ttcctacagcccggacgacttgttaagataaaaactgaaaaacacgaatatgactgggga
attatagtgaactttaggcaaaaaacaaaaggaaaaaaagggaaacacgagaatccctta
acagctgaaacagtcatattagtggataccctgttacatgtgaagaaatcaagtggagac
gatccagacactaatgttccatgtccacctggtgagacgggagatgttgaagtcgttcca
gtgctacacactttgatcaatcaaataagctcgctgagagtctattatccaaaagattta
aggccagcggatagtaggaaatccgtactgaagacaattaatgaagtgaaaaaacgtttt
cccgacggaccacctttgttaaacccaataaaggatatgaaaattgatgaaccggtgttc
aaggagtgtgtggataaaatcaaattgtatgaagagaggttatttgctcaccctttacac
aaagacaagaatcgaggagcgcttacagccgcctttgaaaagaaacaagaaatatttgag
gaactaaagcaagcgaaaggtgaacttaaaaaagcgaaaagtattttacaaatggacgat
ttaaagaaacgcaaacgtgttcttagacgaatgggatattgtactatgtctgatgttatc
gaactcaaaggacgaattgcctgcgagctcagtagtgctgacgagctgttattgaccgag
ttaatatttaatggagttttcaactcattgacaccagagcaatgtgcggctctagtaagc
tgttttgtctgtgatgagaattcgacgcaggcttctgccactggcgaggagttgaaaggt
gttttaaggcaattacaggaatatgctagaagaattgctaaaatatcaatagaagcccat
atggatttagtagaagacgagtatgtaggcaaattcaaatgtacgatcatggatgttgta
ctcgcctgggcgaaaggcgctaatttcctgcaaatatgcaagatgacagatgtttttgaa
ggttcaataatccggtgtatgcgtcgcctagaagaggtattacgtcagttatgccaagcg
gccattaatattggtaacgttgacttggagaacaaattcagtgaagccattaaattgctc
aaacgtgacattgtattcgccgccagtctttacatgtag
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