Pieris rapae (cabbage white): 111004464
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Entry
111004464 CDS
T05162
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
prap
Pieris rapae (cabbage white)
Pathway
prap03013
Nucleocytoplasmic transport
prap03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
prap00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111004464
03015 mRNA surveillance pathway
111004464
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prap03019
]
111004464
Enzymes [BR:
prap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
111004464
5.6.2.5 RNA 5'-3' helicase
111004464
Messenger RNA biogenesis [BR:
prap03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111004464
mRNA cycle factors
Common to processing body (P body) and stress granule
111004464
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
ATPase
UvrD-helicase
Helicase_RecD
AAA_16
NPHP3_N
AAA_22
SRP54
nSTAND3
AAA_5
UvrD_C_2
Motif
Other DBs
NCBI-GeneID:
111004464
NCBI-ProteinID:
XP_022131193
LinkDB
All DBs
Position
5:8568576..8575198
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AA seq
1037 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEETDLIGADTQGSEFEFTDFTLPSQSQTQASQHDHGLPSANQ
VNGLERSDINSKLASVTNAIAELQFEEDDEALYSSKELPDHACKYCGIHDPSTVVMCNIC
NKWFCNGRGNTSGSHIINHLVRAKHKEAALHRDGPLGETLLECYSCGARNVFVLGFIPAK
ADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLISDRAFLSWLVKVPSEAEQMRARQVTPQ
QIGRLEELWRDNVDATFQDLEKPGVDEEPHQVLLRYEDGYQYQNIFGPLVKLEADYDKRL
KESQTQEGIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLRYVGELHKAWSGVGHV
IKVPDNYGDDVGLELKSGAGAPLDCTSNFVVDFIWKSTSFDRMQLALRKFAVDESSVSGY
IYRRLLGHEVEEVLFRVHLPKHFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTV
TSATIVYQLVRQNGGPVLVCAPSNTAVDQLTEKIHRTGLKVVRLCAKSREAMESSVSFLA
LHEQARVLGSADSELRKLTRLKEEAGELSAADERRYRALRRAAERRLLDAADVVCTTCVG
AGDPRVARMRFQSILIDEGMQSTEPECMVPVVLGARQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERRLHKIDFPW
PRPDRPMFFYVTQGQEEIAGSGTSYLNRTEAANVEKLTTRFLKAGVRPEQIGIITPYEGQ
RSYLVQHMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLSDPRRL
NVALTRAKYGLIVVGNPKVLSKQPLWNHLLAFYKERRVLTEGPLSNLKESAIQFAKPKKL
VNAQNPGSHFMSTSMFDAREAMVPGSIYDRARPLRDPLAYVGPERAAMLHAPVPPAAFSA
HRGLQRPPMNMNQRSRKRPPRLSQEPLSQQAPLSLSQGASQPDFSQESLAPDCPSQPDGL
LSQDSTYQGGFRARSQY
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atgagcgttgatgcgtatggacctagctcacaaacgctcacgtttttggataccgaagaa
acggatcttattggtgctgatactcaagggtctgaattcgagttcacagattttacttta
ccatcccaaagtcaaacgcaagcatctcaacatgaccatggcctgccctctgccaatcag
gttaatggattggagagatcggacattaattcaaaattggcaagtgtaaccaatgcgatt
gctgaattgcaatttgaggaagatgatgaagctctgtatagtagcaaggaattgcctgat
catgcttgcaaatactgtgggatacatgacccatctactgtggtaatgtgcaacatttgc
aacaaatggttttgcaatggccgtggaaatacatctgggtcccatataattaatcatctg
gtgagagctaagcataaggaagcagcattacaccgtgatggacctcttggagaaacccta
cttgagtgttactcttgtggagcaaggaatgtctttgttttaggatttattcctgctaaa
gccgattcagttgttgttttgctatgcaggcaaccatgtgccgctcaaagctccttgaaa
gatatgaactgggatcaagaacagtggaagcctttgatttcggatagagcatttctgtca
tggctagtcaaggtaccatctgaagctgaacagatgagggcacgtcaggtgacacctcaa
caaatagggcgcttagaagagctttggcgcgacaatgtcgatgcaacattccaggacttg
gagaaacctggtgtagatgaggagccacatcaagttttgttaagatatgaagatggctac
caataccaaaacatttttggcccacttgttaaacttgaggcggattacgacaagcgtctt
aaggaatcgcagacccaagaaggtattgaagtccgttgggatgtgggacttaataaaaag
accattgcctacttcacactggcaaaaactgatagtgacatgaaactcatgcatggagat
gagttaagattaagatatgttggcgagttgcacaaggcgtggtccggcgtgggtcacgtg
atcaaggtgcctgataactacggcgatgacgtgggtctagaactaaagagcggcgccggc
gcaccactggattgtacttccaactttgtcgtagacttcatttggaagagtacttctttt
gatcgaatgcaattagcactgcggaaattcgcagtcgacgagtcctcggtctcgggatac
atatacagacgacttttgggacatgaggtggaagaagtattgttccgagtgcatctgccc
aaacacttcagcgcccctaacttgcctgatctaaaccgatctcaggtatatgctgttaag
cacgccctgcaacgtccactttccttgatccaaggtccacctggaactggaaaaactgtg
acttcagccacgattgtttatcaacttgtgaggcagaacggtggtccggtactcgtctgc
gcaccttcgaacactgcggtagaccaactgacggagaaaattcatagaacaggactcaaa
gtagtaaggctgtgcgccaagtcccgtgaagctatggagtcttccgtctcttttctggcc
ctgcacgaacaggcaagagttttagggtcagccgatagtgagcttcgaaaacttacaaga
ttgaaggaggaagctggtgaattatccgcagccgatgaacgcagataccgtgcattacgt
cgcgccgctgaaagaagactcttggatgctgctgacgttgtctgcaccacttgtgtcgga
gctggagatcctagggtggcgagaatgcgcttccagtctattcttattgatgaaggcatg
cagtctactgagcctgagtgtatggtaccggttgtgctcggagctagacagctgatcctc
gtcggagatcattgccagttaggcccagttgtgatgtgcaagaaggcggccaaggcagga
ctaagccagagcttgttcgagcgtctcgttgtcctcggcatcaggccattccgcctcgaa
gttcaataccgtatgcacccggagctatcgcgtttcccgtcagatttcttctatgaaggt
tccctgcaaaatggagttagtgcggaagaaagacgcctacacaaaatcgatttcccgtgg
ccgagaccggatcgccccatgttcttttatgtgacacaaggacaagaagaaatcgcaggg
tcgggaacatcttatctgaatcgtacagaggccgctaatgttgagaaacttacgacccgc
tttttgaaggctggtgtgagaccagaacagatcggtatcatcacgccatatgagggacaa
agatcttacctggtacagcacatgcaataccagggaagcttacacgcgaagctttatcaa
gagattgaagtggcaagcgtggacgcgttccaaggtcgtgagaaggacatcattataatg
tcttgtgtccgctccaatgaacatcagggaattggatttttaagcgatccgcgccgttta
aacgtcgccctgactcgagccaagtacggtttgattgttgtcggcaaccctaaagtttta
agcaagcagccactatggaatcatctcctggcattttacaaagaacgtcgcgtgcttacc
gaaggaccgctttccaacctaaaagagtccgcaatacagttcgccaagccgaaaaaactg
gtgaacgctcagaatcccggatcgcactttatgtcgacgtccatgtttgacgcccgcgag
gctatggtccccggatccatctacgacagagcgagaccattgagagatccgttagcgtac
gttgggcctgagcgagcggcgatgttgcacgcgcccgtgccgccggccgccttctccgcc
catcgaggcctccaacgcccgccgatgaacatgaaccaacgaagcaggaagcgtccgccc
cgattatcgcaggaaccgttgtcccagcaagcgccgctttcgttgtcccagggagcgtcc
cagccggacttcagtcaggaatccctcgcgccggactgtccgtcccaaccggacggcctc
ctgtcccaggactccacataccagggcgggttccgcgcgcgaagccagtactga
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