Pandoraea pnomenusa: X636_07260
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Entry
X636_07260 CDS
T02950
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
prb
Pandoraea pnomenusa
Brite
KEGG Orthology (KO) [BR:
prb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
prb03016
]
X636_07260
Enzymes [BR:
prb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
X636_07260
Transfer RNA biogenesis [BR:
prb03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
X636_07260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Collagen
Motif
Other DBs
NCBI-ProteinID:
AHB75271
LinkDB
All DBs
Position
complement(4659756..4661957)
Genome browser
AA seq
733 aa
AA seq
DB search
MSPIAIDGCFMNIFFEESGGFKAGTVLSQQGESYQVELPGGRRSKIKGRDVLLRFETPTP
AELIAQAQAAAQDIDMSFLWECAPAEEFPFPTLAAEYFGEGASVAQQAGLALALQASPIY
FRRKGRGQYQRAPQEQLQAALAGLARKQQQAELQAGYADQLIAGTLPDALRGKELVLLFR
PDKNAIEWKALDAAAIALGKTHAEVMLACGGIASPRAYHEAAFLYEYFPRGTGFPDVGPV
PLPADDLPLAEVQAFSIDDSTTTEIDDALSVQMLPDGLLRVGIHIAAPALGLSRGDPIDE
IARVRLSTVYAPGEKITMLPDAVVEAYTLAEGGARPALSLYVVVKADTYEIVATETRAER
VPISANLRHNELDSIITAETLADGSGDYPHKDELRLLWPFAQSLYDKRQAARVGYGLRPE
VQNKTDFNFYVDGEHVTIKQRLRGAPLDLIVAEMAILANSRWGRLLAECGVPGIYRAQRA
YGVNRTRMQTSPAPHEGLGVEQYAWSTSPLRRYVDLVNQWQLIACVRHGVTAKLAAPFKP
KDADLYATVSSFEAAYAAYGEHQSRMERYWCLRWLIQENKSQVQASVLKGDTVRLNDIPL
TLIVPGLGLHARGTQIMLDVLSLDVVTLSISVRVSQVLDASQALLGDDDDEGDGGEGEGG
EGSDGNAGSDGADGDDGADGADGADGTDGDDSPADADGSGDRTDAGATSTDASPLAAALM
AAGARDASASTAC
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atatcgcctattgcgatcgatggctgtttcatgaacattttttttgaggaatccggcggc
ttcaaggctggcacggtgttgtcgcagcagggcgagtcgtaccaggttgagctgcccggc
gggcgccgaagcaagatcaaggggcgcgacgttctgttgcgcttcgagacgcccaccccc
gccgaactgatcgcgcaagcgcaggccgcggcacaggacatcgacatgagtttcctgtgg
gagtgcgcgcctgccgaagaatttccgttcccgacgctcgccgccgaatatttcggagaa
ggggcgagcgttgcccagcaggcgggactggcgctggccctgcaggcgtcgccgatctac
ttccgtcgcaaggggcgcggacaatatcagcgcgcgccgcaggagcagctgcaggccgcg
ctcgccgggctggcgcgcaagcaacagcaggccgaactgcaggcggggtacgccgatcaa
ctgatcgccggtacgctaccggacgcgctcaggggcaaggagctggtgctgctgttccgt
ccggacaagaacgccatcgagtggaaggcgctcgacgcggcggcgattgccctgggcaag
acgcacgccgaggtgatgctggcatgcggcggcattgcgtcgccgcgcgcttaccacgag
gcggcgttcctctacgaatacttcccgcgcggcaccggcttccccgacgtgggacccgtt
cccctgccggccgacgacctgccgctggccgaggtgcaggcattctcgatcgacgattcg
acgaccacggagatcgacgacgcgctctcggtgcagatgctgcccgatggcctgctgcgc
gtgggtatccatattgcggcaccggcgctggggctctcacgcggcgatcccatcgacgaa
atcgcgcgcgtgcgcctgtcgacggtctatgcgcccggcgagaagatcacgatgctgccc
gatgccgtggtcgaggcttacacgctcgccgagggtggcgctcgcccggcgctctcgctt
tacgtggtggtcaaggcggacacctacgagatcgtggcgaccgagacccgggccgagcgg
gtgccgatctcggcgaacctgcgccacaacgagctcgattcgatcatcacggccgaaacg
ctggccgacggcagcggcgactatccgcacaaggacgagcttcgcctgctgtggccgttc
gcgcagtcgctctatgacaagcgccaggcggcgcgcgtgggctacggcctgcgcccggaa
gtacagaacaagaccgacttcaacttctatgtcgacggcgagcacgtcacgatcaagcag
cgcctgcgcggcgcaccgctcgatctgatcgtcgccgagatggcgattctcgcgaacagc
cgctggggacgcctgctggcggaatgcggtgtgcccggcatctaccgtgcacaacgtgcc
tacggcgtgaatcgcacgcgcatgcagacctcgcccgcaccgcacgaggggcttggcgtg
gagcaatacgcgtggagcacgtcgccgctgcgccgctacgtcgatctggtgaaccagtgg
caactgatcgcctgcgtgcgtcatggcgtgaccgccaagctggcggccccgttcaagccg
aaggacgccgacctctatgccacggtgtcgagcttcgaggccgcctatgcggcgtacggt
gagcaccagagccgcatggaacgctactggtgcctgcgctggttgatccaggagaacaag
tctcaggtgcaggcgagcgtgctcaagggcgataccgttcgtctgaacgacatcccgctc
acgctgatcgtgccgggcctgggattgcacgcgcgcggcacgcagatcatgctcgacgtg
ctctcgctcgatgtcgtcaccctcagcatctcggtgcgtgtctcgcaagtgctcgacgcc
agccaggcgttgctcggagacgacgatgacgagggcgacggtggcgaaggcgaggggggg
gagggcagtgacggcaatgcgggtagcgacggcgccgatggtgacgatggtgccgacggt
gccgatggcgccgacggtacagatggcgacgatagtcccgcagacgccgacggctcgggc
gatcgtactgatgccggcgccacgtccaccgacgcctccccgctcgccgccgcactgatg
gccgcgggcgcgcgcgacgcatccgccagcacggcgtgctga
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