KEGG   Pandoraea pnomenusa: X636_09270
Entry
X636_09270        CDS       T02950                                 
Name
(GenBank) RNA polymerase subunit sigma
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
prb  Pandoraea pnomenusa
Pathway
prb02020  Two-component system
Brite
KEGG Orthology (KO) [BR:prb00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    X636_09270
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:prb03021]
    X636_09270
Transcription machinery [BR:prb03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     X636_09270
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 Sigma70_ECF HTH_20 HTH_24 PhyR_sigma-like HTH_23 GerE HTH_IclR Xre-like-HTH HTH_11 MarR_2 HTH_Crp_2 HTH_10 HTH_28 HTH_40 MarR HTH_5 TnsD HTH_29 HTH_38
Other DBs
NCBI-ProteinID: AHB75617
LinkDB
Position
complement(5080740..5081255)
AA seq 171 aa
MPPDTTLTTLTTLRGLYNDHHGWLHGWLQRKTGCSHRAADLAHDTFVRMLERDPPRRLAS
PRAFITTVAQRVLYNFWRREQIERAYLDALAQQPESLVPSPEERAVVLETLLEIDRCLDG
LPPLVKRAFLLAQLDGLTQGEIADTLGISLATVKRHLVRAGTQCFFAMEAS
NT seq 516 nt   +upstreamnt  +downstreamnt
ctgccgcccgataccacgcttaccacgcttaccacgcttcgcggcctctacaacgatcat
cacggctggctgcatggctggcttcagcgaaagaccggctgctcgcaccgcgcggccgac
cttgcgcacgacacgttcgtgcgtatgctggagcgcgatccgccgcgacggctggcgtcg
ccgcgcgcgttcatcacgaccgtagcccagcgggtgctttacaacttctggcgtcgcgag
cagatcgagcgcgcgtatctggacgcactggcacagcagcccgagtcgctcgtaccgtcg
cccgaggagcgcgccgtggtgctcgagacactcctcgagatcgatcggtgtctcgacggc
ctgccgcccctcgtcaaacgcgccttcctgctcgcccaactcgacggcctcacccagggg
gaaatcgccgacacactcggcatctcgctggcgacggtgaaacgtcatctggtgcgtgcc
ggcacacagtgcttcttcgcgatggaggcttcatga

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