Pandoraea pnomenusa: X636_19470
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Entry
X636_19470 CDS
T02950
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
prb
Pandoraea pnomenusa
Pathway
prb03410
Base excision repair
prb03430
Mismatch repair
prb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
prb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
X636_19470
03430 Mismatch repair
X636_19470
03440 Homologous recombination
X636_19470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prb03400
]
X636_19470
DNA repair and recombination proteins [BR:
prb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
X636_19470
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
X636_19470
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
X636_19470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
AHB77379
LinkDB
All DBs
Position
complement(1918726..1920429)
Genome browser
AA seq
567 aa
AA seq
DB search
MTDIVTRQVDDAAAHALARDGIHPVLARLFASRGVLASEETETALARLIPPTQLKGAREA
AVFLADTIAANRRMLVVADYDCDGATACAVAVRGLRMFGAKVDYLVPNRFEYGYGLTPEI
VALAAQGRQGPPDVLITVDNGIASLDGVAAAQRLGIEVVVTDHHLPGSELPNARCIVNPN
QPGCEFPSKHLAGVGVMFYVLLALRAELRARGAFGAREQPRLDTLLDLVALGTVADVVKL
DANNRILVAQGLARMRAGRMHPGINALFRAAARNARQAGSFDLGFGLGPRLNAAGRLADM
SLGIECLLTDDDARAWTLAQELDAMNRERREIEAGMQQEALADLARFDPRSATTLCAFNE
TWHQGVIGIVAARLKEKFYRPTIVFAPGDDGQIKGSGRSIPGFHLRDALNLVTKREPGLI
AKFGGHAMAAGLSIAADALPRFQAAFEAVGQEWLDEKALSRVIETDGDIGDECFVPPFVA
ILDAQVWGQGFPPPVFSGEFDVLSQAILKDKHLKLQLGRGRMRMNAIWFNHADTLPSRAQ
FAYRLAADTFNGVSRVQMIIEHAQGQG
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacatcgtcacgcgtcaggtcgacgacgccgccgcgcacgccctcgcacgcgac
ggcatccacccggtcctcgcccgactgttcgcctcgcgaggcgtattggccagcgaagag
accgagaccgccctcgcccgtctgattccgcccacgcagctcaaaggcgcgcgcgaagcc
gccgtctttctcgccgacaccatcgccgcgaaccggcgcatgctcgtggtcgccgattac
gactgcgatggcgcgaccgcctgcgccgtcgccgtgcgcggcctgcgcatgttcggggcg
aaggtcgactacctcgtgccgaaccgcttcgaatacggctatggcctcacgcccgagatc
gtggcgctcgccgcgcaaggcaggcagggcccgcccgacgtgctcattaccgtcgacaac
ggcatcgccagcctcgacggcgtggcggccgcgcagcgcctcggcattgaggtcgtggtg
acggatcaccacctcccgggcagcgagttgcccaacgcccgttgcatcgtcaacccgaac
cagccgggctgcgagtttccgagcaagcatctcgcgggcgtgggcgtgatgttctacgta
ttgctcgccctgcgcgccgaactgcgcgctcggggagctttcggcgcgcgcgagcagccg
cgtctcgataccctgctcgatctggtggcgcttggcaccgtggccgacgtcgtgaagctc
gacgccaacaaccgcatcctggttgcgcaaggcctcgcgcgcatgcgcgcgggtcgcatg
catccgggcatcaacgcgctgtttcgcgccgcggcccgaaatgcccgccaggccggcagc
ttcgacctgggtttcggactcggtccccgcctgaatgccgcgggccgcctggccgacatg
tcgctcggcatcgaatgcctgctcaccgacgacgacgcccgcgcctggacgctcgcgcag
gaactcgacgccatgaatcgcgagcgccgcgaaatcgaagccggcatgcagcaggaagcg
ctggcggatctcgcgcgcttcgacccgcgttcggccaccacgctttgcgcgttcaacgag
acctggcaccagggcgtgatcggcatcgtcgcggcccgcctgaaggaaaagttctatcga
ccgacgatcgtgttcgcgccgggcgacgacgggcagatcaaggggtccggccgctcgatt
ccgggttttcacctgcgcgacgcgctcaatctcgtcacgaagcgcgagccgggcctgatc
gccaagttcggcggtcacgccatggcggcgggactgagtatcgccgccgacgccctgccg
cgctttcaggcggcgttcgaggcggtcggacaggaatggctcgacgagaaggcgctgtcg
cgcgtgatcgaaaccgacggcgacatcggcgacgagtgtttcgtcccgccgttcgtggcc
atcctcgatgcgcaggtctggggccaggggttcccgccgccggtcttttcaggcgagttc
gacgtgctctcgcaggccatcctcaaggataagcacctgaagctgcaactggggcgcggg
cgcatgcgaatgaacgccatctggttcaatcatgccgacaccctgccaagccgcgcacag
tttgcctatcgcctggcggccgacacgttcaacggcgtctcgcgcgtgcagatgatcatc
gagcacgcccagggccagggttag
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