Pandoraea pnomenusa: X636_21295
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Entry
X636_21295 CDS
T02950
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
prb
Pandoraea pnomenusa
Brite
KEGG Orthology (KO) [BR:
prb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prb03019
]
X636_21295
Enzymes [BR:
prb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
X636_21295
Messenger RNA biogenesis [BR:
prb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
X636_21295
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
WHD_HA2
HA2_C
DEAD
AAA_19
AAA_22
NACHT
T2SSE
nSTAND3
nSTAND_NTPase5
AAA_30
AAA_23
TsaE
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AHB77670
LinkDB
All DBs
Position
2280108..2284343
Genome browser
AA seq
1411 aa
AA seq
DB search
MASDERNRQSQPPKPKVTAPGQTRAQPRDPAQSQTTSDPGGAPANAGHRPGRSRQPDRGG
EAGAAAGNRATKAATGPGNAATAARRPSPAERAARDAERLAARQAAANRVPEIAFPEALP
VSARREEIARAVADHQVVIVSGETGSGKTTQLPKICLALGRGLGAGGTGLIGHTQPRRIA
ASATARRIADELGTPLGEIVGFKVRFNDTLSNGASVKLMTDGILLAETQTDPLLRAYDTI
IIDEAHERSLNIDFLLGYLKQLLPRRPDLKVIITSATIDADRFARHFGTGEGETLRPAPV
IEVSGRLYPVEVRYRPIQDDARIANAEGRENSRASARDRERDLMDGIVDAVDELCREGAG
DVLVFLPGEREIREAAEALRKHHPPHTEILPLFARLSAAEQERVFRPSNARRIVLATNVA
ETSLTVPGIRYVVDAGTARVKRYSYRNKVEQLQIESISQAAANQRAGRCGRVADGVCIRL
YDEADFQSRARFTDPEILRSSLAAVILRMQSLRLSKVEEFPFLEPPPGRAIADGYQLLGE
LGAVDDANQLTPLGRELARLPLDPRVGRMILAARDQQSLREVLIIASGLAVQDPRDRPIE
AQDAADNAHRKFADEKSEFLSWLKIWKWFEEAIAHKKSNRLLTQACRENFLSQLRLREWR
DVHSQLLTVVREQGWRINESEATYEQVHLALLAGLLGNIGCKADDDPHFLGAHGIKFHIW
PGSSLVKKAGRWVMAGELVETSRLYARCIARIEPEWIERVGKHLVKTSLSDAHWEKKAAQ
VTAYERGTLYGLTIYARRRMNFGPRDPRRAREIFLRSALVEGDWETKLPFYAHNRKLIAD
IEQLEHKSRRQDVLVDDELIYAYYDAHVPAGLYDGASFEHWYRETSKGTPRLLYLVRDDL
MRHEAAGVTTDLFPKKTAIAGVEMALTYHFEPGSPRDGVTLAVPLYALNQVDARRCEWLV
PGMLKEKAHLLMKSLPQKLRRHFVPLPEYAAGFVDRATFGQGALLDALIADAREQTGVML
KASDFKLEMLPAHLSMNFKVIDEHGRQLGMGRNLSQLRAELGQQAQRTFQALAARSGATP
TGGTATESSSRGGPAPRGDGKAGGKTGAQAVPGASAASGTGAAAVEPGRYDNLTTWSFGE
LPEMLEIRRGGQTLFGYPALVDRGDHCDLEVFDDPDEAQRQHRAGLRRLFAIQLREQVKY
LEKNIPGLQQMAMQYLHLGTQEALRDQIVDLALERACLQLPWPSDNASFVARKDEGRGRL
TLLAQEIARLAGQILAEYAALQKKLAQAKPFAQAHADLTAQLQRLVGKRFLIDTPYAQLA
HFPRYLKAMAARIDKLKADPSRDARAMSELGPLLQNWQRATSQRRDQGDARLDEFRWLLE
ELRVSLFAQELRTPMPVSVKRLHKVWEALQR
NT seq
4236 nt
NT seq
+upstream
nt +downstream
nt
atggcaagtgacgaacgaaatcgacaatctcagcccccgaagccgaaagtgacggcgccg
gggcaaacgcgcgcccaacccagggacccggcgcaatcgcaaacgacgtccgatccgggc
ggcgcgcctgcgaacgcgggccatcgccccggacgctcccgccaaccggatcgcggcggc
gaggcgggcgccgccgcgggcaaccgcgcgaccaaagccgcaacggggccgggcaatgcc
gcgacggccgcacgtcggccgtcgccggccgagcgtgccgcgcgcgacgccgagcgactc
gccgcacggcaggccgccgccaaccgcgtgcccgaaatcgcattccccgaggcactgccg
gtgtccgcacgccgcgaggagatcgcacgcgccgtcgccgaccaccaggtggtgatcgtg
agcggcgagaccggctcgggcaagaccacgcaactgccgaagatttgcctcgcgcttggg
cgtggcctcggcgccggcggcaccggcctgatcgggcatacgcagccgcggcgcatcgcc
gcgtcggccaccgcgcgccgcatcgcggacgaactcggcactccgctcggcgaaatcgtc
ggcttcaaggtgcgtttcaacgacacgctgtccaatggggcatcggtcaagttgatgacc
gacggcatcctgctcgccgagacgcagaccgacccgctgttgcgtgcttacgacaccatc
atcatcgacgaggcgcacgaacgcagcctcaacatcgacttcctgctgggctatctgaag
cagttgctgcccaggcgtccggacctgaaggtcatcatcacgtcggccaccatcgatgcg
gatcgcttcgcgcgccacttcggcaccggcgaaggcgagaccctgcgtccggcccccgtc
atcgaagtgagcggccggctgtacccggtggaagtgcgctatcggccgattcaggacgac
gcgcgcatcgccaacgcggaaggccgcgagaacagtcgcgccagcgcccgcgatcgtgag
cgcgatctcatggacggtatcgtcgatgccgtggacgaactctgccgcgagggggcgggc
gacgtgctcgtgttcctgcccggcgagcgcgaaattcgcgaagcggcggaggcactgcgc
aagcatcatccgccgcacaccgagatcctgccgctcttcgcgcgcctgtccgccgccgag
caggagcgcgtgttcaggccgtcgaacgcccgtcgcatcgtgctcgcgaccaacgtggcc
gagacctcgctgaccgtaccgggcatccgttacgtggtcgatgccggcaccgcgcgggtg
aagcgctactcctaccgcaacaaggtcgagcagcttcagatcgaatcgatctcgcaggcg
gcggccaatcagcgcgcgggtcgctgcggtcgcgtggccgacggcgtgtgcattcgtctg
tacgacgaagcggacttccagtcgcgcgcgcgattcaccgaccccgagattctgcgctcg
tcgctcgccgcggtaattctgcgcatgcagtcgctgcgcctgtcgaaagtcgaggaattc
cccttcctcgagccaccgccgggccgcgcgattgccgacggctaccagttgctgggcgaa
ctgggtgcggtcgacgacgccaaccagctcacgccgcttggtcgtgagctggcgcgtttg
ccgctcgatccgcgcgtcgggcgcatgatcctggccgcgcgcgaccagcagtcgctgcgc
gaagtcctcatcatcgcgagcggactggccgtgcaggacccgcgcgaccggcccatcgaa
gcccaggacgccgccgacaacgcccaccgcaaattcgcggacgagaagtccgaattcctc
tcctggctcaagatatggaagtggttcgaggaggcgatcgctcacaagaagtcgaaccgc
ctgctgacacaggcctgccgcgagaatttcctctcgcaactgcgtctgcgcgaatggcgc
gacgttcacagtcagttgctgaccgtggtgcgcgagcagggttggcgcatcaacgagtcc
gaagccacatacgagcaggtgcaccttgcgctgctcgccggcttgctcggcaacatcggc
tgcaaggccgacgacgatccgcacttccttggcgcgcacggcatcaagttccacatctgg
ccgggctcctcgctcgtgaaaaaggccgggcgctgggtcatggccggtgaactcgtcgag
acgagccggttgtacgcgcgctgcatcgcgcgcatcgagccggaatggatcgagcgtgtg
ggcaagcacctcgtgaagacctcgctgtccgacgcccactgggaaaagaaggccgcgcaa
gtcacggcgtacgagcgcggcacgctctacgggctgacgatctacgcccgccgtcgcatg
aacttcggcccgcgcgatccgcgtcgcgcccgcgagatcttccttcgcagtgcgctcgtc
gagggcgactgggaaacgaagctgccgttctacgcgcacaatcgcaagctgatcgcggac
atcgaacagctcgaacacaagtcgcggcgccaggacgtgctcgtcgacgacgagttgatc
tacgcctactacgacgcacacgtgcccgccggcctttacgacggcgccagcttcgagcac
tggtatcgcgagacgtccaagggcacgcccagactgctctacctcgtgcgcgacgacctg
atgcgccacgaggccgcgggtgtcacgaccgacctgttcccgaagaagacggcgatcgcg
ggcgtcgaaatggcgctcacgtaccacttcgaaccggggtcgccgcgcgacggggtcacg
ctggccgtaccgctctacgcgctcaatcaggtcgacgcgcgccgatgcgaatggctcgtg
ccgggcatgctcaaggagaaggcgcacctgctgatgaagtcgctgccgcagaagctgcgc
cgtcacttcgtgccattgcccgaatacgcggccgggtttgtcgatcgcgccacgttcggc
cagggcgcactgctcgacgcgctgatagccgatgcgcgcgagcagaccggtgtcatgctc
aaggcgagcgatttcaaactggaaatgctcccggcgcacctgtcgatgaacttcaaggtg
atcgacgagcacgggcgtcagctcggcatgggacgcaatctctcgcagttgcgcgccgaa
ctcgggcagcaggcgcagcgcacgttccaggcgctggccgcccgaagcggtgccacgccc
accggcggcaccgcgacagaatcttcgtcgcgcggcggccccgcgccgcgcggcgatggc
aaggcaggcggcaagaccggcgcgcaggccgtaccgggggcgtccgcggcatcgggcacg
ggcgccgcggcggtcgagcccggtcgctacgacaacctgacgacctggagcttcggtgag
ttgccggagatgctcgagattcgccgcggcggccagacgctgttcggctatcccgcgctg
gtcgatcgcggcgatcactgcgacctcgaagtattcgacgatccggacgaagcgcaacgt
cagcatcgggcaggactgcggcgactgttcgcgattcagttgcgcgagcaggtgaagtac
ctggagaaaaacatccccggactgcagcagatggccatgcagtacctgcacctcgggaca
caggaggcactgcgcgatcagatcgtggatctggcgctggagcgcgcctgtcttcagttg
ccatggccgagcgacaacgcctcgttcgtcgcgcgcaaggacgaggggcgtggacgtctc
acgctgctcgcgcaggaaatcgcgcgcctggccgggcagattctggccgagtacgcggcg
ttgcagaagaagctcgcgcaggccaagccgttcgcgcaggcgcatgcggatcttacggcg
cagttgcaacgtctggtcggcaagcgcttcctgatcgacacgccctatgcccagctggcg
cactttccgcgttacctcaaggcgatggccgcgcgcatcgacaagctcaaggccgatccg
tcgcgcgacgcgcgtgccatgagcgagctcggcccgttgttgcagaactggcagcgggcc
acgtcgcaacgccgggatcagggcgatgcgcgactcgacgaatttcgctggctgctcgag
gaattgcgcgtctcgcttttcgcacaggagctgcgcacaccgatgccggtgtcggtcaag
cggctccacaaggtctgggaggcgctgcagcgctga
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integrated database retrieval system
