Prochlorococcus sp. MIT 0604: EW14_1241
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Entry
EW14_1241 CDS
T03304
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
prc
Prochlorococcus sp. MIT 0604
Pathway
prc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EW14_1241
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prc03019
]
EW14_1241
03009 Ribosome biogenesis [BR:
prc03009
]
EW14_1241
Enzymes [BR:
prc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EW14_1241
Messenger RNA biogenesis [BR:
prc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EW14_1241
Ribosome biogenesis [BR:
prc03009
]
Prokaryotic type
rRNA helicases
EW14_1241
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
CMS1
AAA_22
AAA_30
Cas3-like_C_2
Flavi_DEAD
MJ1010-like_2nd
Motif
Other DBs
NCBI-ProteinID:
AIQ95254
LinkDB
All DBs
Position
complement(1043940..1045721)
Genome browser
AA seq
593 aa
AA seq
DB search
MALKKDSNSLGSEQEKSQNEDASMIELKNLENKKEIESQPLEVSKENDNENGFLDFGFNQ
SILNSLINKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPLIEKLADNKELN
AKVLVMTPTRELATQVAESFKSYSSESSNFKTVAIYGGTDYRNQIFALKRKVDVVVGTPG
RIMDHIRQGTFKIKDINCLVLDEADEMLNMGFLEDIEWIIDQLPGNKQMVLFSATMPSEI
RNIAKKYLNDPAEILIKSVKKETQLISQKFLYVQRHHKLDALKRILEINNEGVIIFVRTK
LLTTSIAEALENSGHTVAVLNGDIPQNQRENTVDRLKKGFINILVATDVAARGLDVERIK
LVVNYDFPFDKETYTHRIGRTGRAGRSGEAILFVNQREKHFLRNLENSTRTKIEEINIPS
NKVINEKRMEKLIENVNESSLAKDENEENKALIIDVLDNLKEKYAMDESNIAMAAINLVI
GNKSFFVNEDDSWIHKQNNNDRNRSNRNINNRMRNSNRRNNYQNDSFETYKFNFGKFDGV
RVANIISSICNSTNINGRSIGKIQIFNEYSLVDLPRDLHRETKNKLKKIKVRN
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atggctttaaaaaaagatagtaactctcttggtagtgagcaggaaaaatctcagaatgaa
gatgcttccatgattgagttaaagaacttagagaataaaaaagaaattgaatctcaacca
ttggaagtatcgaaagaaaatgataatgagaatggatttctcgattttggttttaatcaa
tcgatcttaaattcgttaataaataaaggatataaaaatccaactcccattcaaaaagct
gcaattccagaactaatgttaggcagagatttactaggccaagcacaaacaggaacagga
aagactgcagctttcgcattacccttaatagaaaaacttgcagataataaagaattaaat
gccaaggttttagttatgactcctacaagagaattagcaactcaagtggcagaatctttt
aaaagttatagttctgaatctagtaattttaagacggttgcaatatatggaggtaccgac
tatcgaaatcaaatttttgcattgaaaagaaaagttgacgtagtagttgggacccctggc
agaatcatggatcatataaggcagggaacttttaaaattaaagacataaattgtcttgtt
ttagatgaggctgatgaaatgttaaatatgggttttcttgaagatattgaatggataata
gatcaacttccgggaaataagcagatggtattgttttcagcaacaatgcctagtgagata
agaaatattgcgaaaaaatatctaaatgatcccgccgaaatattaatcaaaagtgtcaaa
aaagaaactcaattaatttcgcaaaaatttctatatgtacaaaggcatcataagttagat
gctttaaaaagaatattagaaattaataacgagggggtaataatttttgtgaggacaaaa
ctacttactacttcaatagctgaagctttagagaattcaggtcatactgtggcagtccta
aatggagatatacctcaaaaccaaagagaaaatactgtagatagattaaaaaaaggattt
attaatatccttgttgcaactgatgtcgcagctagaggattagatgttgagaggataaaa
cttgttgttaattacgattttccttttgacaaggaaacatatactcatagaattggaaga
actggaagagcaggtagatcaggagaagcaattttatttgttaatcaaagagaaaaacac
tttctaagaaacctagaaaactcaacaagaactaagattgaagaaattaatataccaagt
aataaagtaataaatgaaaaaaggatggagaaacttatagagaatgttaatgaaagttct
ttagctaaagatgaaaatgaagaaaataaagctttgattattgatgtactagataattta
aaagaaaaatacgctatggatgaatcaaatattgcaatggcggcgattaatttagtaata
ggtaataaatcattttttgttaatgaagatgattcttggattcataaacaaaataataat
gatcgaaatagatcaaatagaaatattaataatcgtatgagaaattcgaatagaagaaat
aattatcaaaatgattcttttgaaacctacaaatttaactttggcaaatttgatggggtt
agagttgcaaatataatatcctcaatctgtaattcaactaatataaatggtagatccatt
ggtaagatacagatttttaatgagtacagtttggtagatttacccagagatctgcataga
gaaactaaaaataaattaaaaaaaattaaagtcagaaactag
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