Prochlorococcus sp. MIT 0604: EW14_2020
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Entry
EW14_2020 CDS
T03304
Name
(GenBank) Zn-dependent hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
prc
Prochlorococcus sp. MIT 0604
Pathway
prc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EW14_2020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prc03019
]
EW14_2020
Messenger RNA biogenesis [BR:
prc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EW14_2020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RNase_J_C
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-ProteinID:
AIQ96027
LinkDB
All DBs
Position
complement(1704057..1706042)
Genome browser
AA seq
661 aa
AA seq
DB search
MQSSTNSTVKRSTNDSSRSKSNTPALRVIPLGGLHEIGKNTCVFEYGDELMLVDAGLAFP
SDGMHGVNVVMPDTTFLRENQRRIKGMIVTHGHEDHIGGISHHLKHFNIPIIYGPRLAMS
MLRGKMEEAGVSDRTTIQTVNPRDVVKVGQHFSVEFIRNTHSICDSFSLAVTTPVGTIIF
TGDFKFDHMPVDGEQFDIERMVHYGEKGVLCMFSDSTNAEVPGFCPSEKTIYPSLEKHIA
EAKERVILTTFASSVHRVTMILELAMKHGRKVGLLGRSMINVIAKARDIGYMKCPDDLFV
PIKQIRDLPDRETLLLMTGSQGEPLAALSRISRGEHQHVRLKTTDTVIFSASPIPGNTIS
VVNTIDRLMKLGAKVVYGKGENIHVSGHGFQEDQKLMLALAKPKFFVPVHGEHRMLVCHG
KSAQTMGVPKDNILIIENGDVVELTPNSIQKGDPVKAGVELLDNSRNGIVDARVLKERQQ
LAGDGVVTVLAPISTDGKMVAPPRVNLRGVVTTAEPRKMSMWTEREISWVLENRWKQLSR
QTGPNNFEVDWIGVQREIENGLSRRMRRELQVEPLILCLVQPAPSGTRAYIPKITEEQNF
PNRNRNNNNFHKKSNNNHPNNSNNPQNTQKSPNVSQNPSAETAIKDSFEGRTRRRRSAVT
S
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgcaatcaagtacaaattcaaccgtaaaaagatctacaaatgattcatctagatctaaa
agcaatacaccagctctaagagtaatacctcttggaggactacatgaaataggaaaaaac
acctgtgtttttgaatatggagatgaattgatgcttgttgatgctggcctagcttttcca
tctgatggtatgcatggagtaaacgttgttatgccagatacaacttttttaagagaaaat
caaagaagaataaaaggaatgattgttactcatggtcatgaagatcatattggaggtatt
tctcatcatctaaagcattttaatattccgattatttatggtccaaggttggcaatgtca
atgcttagaggaaaaatggaggaagcaggagtatctgatagaactactatacagacagta
aatccaagagacgttgtaaaagttggacaacatttttctgttgaatttattcgaaatact
cattctatttgcgatagtttttctttggcagttacaactcctgttggcacaattattttc
acgggagattttaagtttgatcatatgccagtagatggagaacaatttgatattgaaaga
atggttcattacggagagaagggtgttttatgcatgttcagtgattctactaatgctgaa
gttccaggcttttgtccttctgagaagactatctatccttctttagaaaaacatattgcg
gaggctaaagaacgagttatccttaccacttttgctagttctgttcatagagtgacaatg
atcttagagttggccatgaaacatggaagaaaggtgggtttgttaggtagatcgatgata
aatgttattgctaaggcgagagatattggttatatgaaatgtccagatgatttatttgtt
cctataaagcaaattagagatttaccagatagagagaccctgttattaatgactggaagt
caaggagaacctttagcagcgttaagcagaatatctcgtggtgaacatcagcatgttcgt
cttaagactactgatactgtaatattttcagctagcccaattcctggcaatactatttct
gttgttaatacaatagatagactaatgaaactcggagcaaaggttgtttatggaaagggt
gagaatattcatgtttctggtcatggttttcaagaagatcaaaagttgatgttggcactc
gcaaaacctaagttttttgttcctgttcatggagaacatagaatgcttgtttgtcatggc
aagagtgctcaaactatgggggttcctaaggacaatattttaattattgaaaatggagat
gtagttgaattaacacctaattctattcaaaaaggtgatcctgtaaaagctggtgttgaa
ctgcttgataactcacggaatgggatagtagatgctcgagttttaaaagaaagacagcaa
ttggctggggatggtgtagtaactgttttagctcctattagtacagatgggaagatggtt
gcacctcccagagttaatttaagaggagttgttacaactgcagaaccaagaaaaatgtct
atgtggacagaacgagaaataagctgggtcttagaaaatagatggaaacaattatccaga
caaactgggccgaataattttgaagtagattggattggtgtacaaagagaaattgaaaat
ggtttatctagaagaatgaggagagaattacaagtggagcctcttattttgtgtttagtt
caacctgctccaagtggaactcgtgcttatattccaaagattaccgaagagcaaaatttt
cccaatagaaatagaaataataataatttccataagaaatcaaacaataatcatccgaat
aattcaaataacccacaaaatacccaaaaaagtccaaatgtttcacagaatccatcagct
gagactgctataaaagattcatttgaaggtagaacaagaagaagaagatctgctgtcaca
tcttag
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